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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8XA1

Portal vertex capsomer of vzv b-capsid

PDB DOI: 10.2210/pdb8xa1/pdb

Classification: VIRAL PROTEIN
Organism(s): Human Alphaherpesvirus 3

Deposited: 2023-12-01
Deposition Author(s): Lei, C. , Nan, W. , Xiangxi, W.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.8 Å

8xa1
Literature

Portal vertex capsomer of vzv b-capsid

Lei, C. , Nan, W. , Xiangxi, W.

Primary Citation of Related Structures: 8XA1


Proteins
Molecule Chains Sequence Length Organism Sequence
Major capsid protein A 1345 Human Alphaherpesvirus 3 PAGIIPTGNVLSTIEVCAHRCIFDFFKQIRSDDNSLYSAQFDILLGTYCNTLNFVRFLELGLSVACICTKFPELAYVRDGVIQFEVQQPMIARDGPHPVDQPVHNYMVKRIHKRSLSAAFAIASEALSLLSNTYVDGTEIDSSLRIRAIQQMARNLRTVLDSFERGTADQLLGVLLEKAPPLSLLSPINKFQPEGHLNRVARAALLSDLKRRVCADMFFMTRHAREPRLISAYLSDMVSCTQPSVMVSRITHTNTRGRQVDGVLVTTATLKRQLLQGILQIDDTAADVPVTVLNGANLVTALVMGKAVRSLDDVGRHLLDMQEEQLENARVPADLVIVGDKLVFLEALERRVYQATRVAYPLIGNIDITFIMPMGVFQANSMDRYTRHAGDFSTVSEQDPRQFPPQGIFFYNKDGILTQLTLRDAMGTICHSSLLDVEATLVALRQQHLDRQCYFGVYVAEGTEDTLDVQMGRFMETWADMMPHHPHWVNEHLTILQFIAPSNPRLRFELNPAFDFFVAPGDVDLPGPQRPPEAMPTVNATLRIINGNIPVPLCPISFRDCRGTQLGLGRHTMTPATIKAVKDTFEDRAYPTIFYMLEAVIHGNERNFCALLRLLTQCIRGYWEQSHRVAFVNNFHMLMYITTYLGNGELPEVCINIYRDLLQHVRALRQTITDFTIQGEGHNGETSEALNNILTDDTFIAPILWDCDALIYRDEAARDRLPAIRVSGRNGYQALHFVDMAGHNFQRRDNVLIHGRPVRGDTGQAIPITPHHDREWGILSKIYYYIVIPAFSRGSCCTMGVRYDRLYPALQAVIVPEIPADEEAPTTPEDPRHPLHAHQLVPNSLNVYFHNAHLTVDGDALLTLQELMGDMAERTTAILVSSAPDAGAATATTRNMRIYDGALYHGLIMMAYQAYDETIATGTFFYPVPVNPLFACPEHLASLRGMTNARRVLAKMVPPIPPFLGANHHATIRQPVAYHVTHSKSDFNTLTYSLLGGYFKFTPISLTHQLRTGFHPGIAFTVVRQDRFATEQLLYAERASESYFVGQIQVHHHDAIGGVNFTLTQPRAHVDLGVGYTAVCATAALRCPLTDMGNTAQNLFFSRGGVPMLHDNVTESLRRITASGGRLNPTEPLPIFGGLRPATSAGIARGQASVCEFVAMPVSTDLQYFRTACNPRGRASGMLYMGDRDADIEAIMFDHTQSDVAYTDRATLNPWASQKHSYGDRLYNGTYNLTGASPIYSPCFKFFTPAEVNTNCNTLDRLLMEAKAVASQSSTDTEYQFKRPPGSTEMTQDPCGLFQEAYPPLCSSDAAMLRTAHAGETGADEVHLAQYLIRDASPLRGCLPL
major capsid protein C 1297 Human Alphaherpesvirus 3 IPAGIIPTGNVLSTIEVCIFFRFLELGLSVACICTKFPELAYVRDGVIQFEVQQPMIARDGPHPVDQPVHNYMVKRIHKRSLSAAFAIASEALSLLSNTYVDGTEIDSSLRIRAIQQMARNLRTVSDSFERGTADQLLGVLLEKAPPLSLLSPINKFQPEGHLNRVARAALLSDLKRRVCADMFFMTRHAREPRLISAYLSDMVSCTQPSVMVSRITHTNTRGRQVDGVLVTTATLKRQLLQGILQIDDTAADVPVTYGEMVLQGTNLVTALVMGKAVRNARVPADLVIVGDKLVFLEALERRVYQATRVAYPLIGNIDITFIMPMGVFQANSMDRYTRHAGDFSTVSEQDPRQFPPQGIFFYNKDGILTQLTLRDAMGTICHSSLLDVEATLVALRQQHLDRQCYFGVYVAEGTEDTLDVQMGRFMETWADMMPHHPHWVNEHLTILQFIAPSNPRLRFELNPAFDFFVAPGDVDLPGPQRPPEAMPTVNATLRIINGNIPVPLCPISFRDCRGTQLGLGRHTMTPATIKAVKDTFEDRAYPTIFYMLEAVIHGNERNFCALLRLLTQCIRGYWEQSHRVAFVNNFHMLMYITTYLGNGELPEVCINIYRDLLQHVRALRQTITDFTIQGEGHNGETSEALNNILTDDTFIAPILWDCDALIYRDEAARDRLPAIRVSGRNGYQALHFVDMAGHNFQRRDNVLIHGRPVRGDTGQAIPITPHHDREWGILSKIYYYIVIPAFSRGSCCTMGVRYDRLYPALQAVIVPEIPADEEAPTTPEDPRHPLHAHQLVPNSLNVYFHNAHLTVDGDALLTLQELMGDMAERTTAILVSSAPDAGAATATTRNMRIYDGALYHGLIMMAYQAYDETIATGTFFYPVPVNPLFACPEHLASLRGMTNARRVLAKMVPPIPPFLGANHHATIRQPVAYHVTHSKSDFNTLTYSLLGGYFKFTPISLTHQLRTGFHPGIAFTVVRQDRFATEQLLYAERASESYFVGQIQVHHHDAIGGVNFTLTQPRAHVDLGVGYTAVCATAALRCPLTDMGNTAQNLFFSRGGVPMLHDNVTESLRRITASGGRLNPTEPLPIFGGLRPATSAGIARGQASVCEFVAMPVSTDLQYFRTACNPRGRASGMLYMGDRDADIEAIMFDHTQSDVAYTDRATLNPWASQKHSYGDRLYNGTYNLTGASPIYSPCFKFFTPAEVNTNCNTLDRLLMEAKAVASQSSTDTEYQFKRPPGSTEMTQDPCGLFQEAYPPLCSSDAAMLRTAHAGETGADEVHLAQYLIRDASPLRGCLPL
Tri2A G 297 Human Alphaherpesvirus 3 AMPFEIEVLLPGELSPAETSALQKCEGKIITFSTLRHRASLVDIALSSYYINGAPPDTLSLLEAYRMRFAAVITRVIPGKLLAHAIGVGTPTPGLFIQNTSPVDLCNGDYICLLPPVFGSADSIRLDSVGLEIVFPLTIPQTLMREIIAKVVARAVEDLNPDPDLNVLYYNGARLSLVADVQQLASDAAIRTLVLNLMFSINEGCLLILALIPRLLALGYVNALLQMQSVTREAAQLIHPEAPMLMRRLPIYETISSWISTSSRLGDTLGTRAILRVCVFDGPSTVHPGDRTAVIQV
Tri2A I 297 Human Alphaherpesvirus 3 AMPFEIEVLLPGELSPAETSALQKCEGKIITFSTLRHRASLVDIALSSYYINGAPPDTLSLLEAYRMRFAAVITRVIPGKLLAHAIGVGTPTPGLFIQNTSPVDLCNGDYICLLPPVFGSADSIRLDSVGLEIVFPLTIPQTLMREIIAKVVARAVEDLNPDPDLNVLYYNGARLSLVADVQQLASDAAIRTLVLNLMFSINEGCLLILALIPRLLALGYVNALLQMQSVTREAAQLIHPEAPMLMRRLPIYETISSWISTSSRLGDTLGTRAILRVCVFDGPSTVHPGDRTAVIQV
Tri2B P 307 Human Alphaherpesvirus 3 AMPFEIEVLLPGEISPAETSALQKCEGKIITFSTLRHRASLVDIALSSYYINGAPPDTLSLLEAYRMRFAAVITRVIPGKLLAHAIGVGTPTPGLFIQNTSPVDLCNGDYICLLPPVFGSADEIRLDSVGLEIVFPLTIPQTLMREIIAKVVARAVERTAAGRTPGELPGADVICYNGRRYELETNLQHRDGSDAAIRTLVLNLMFSINEGTTLILTLITRLLVQGAHDGYVNLLIQTANCVRETGQPMPRIQDGHRRFPIYEAISSWISTSSRLGDTLGTRAILRVCVFDGPSTVHPGDRTAVIQV
Tri2B R 307 Human Alphaherpesvirus 3 AMPFEIEVLLPGEISPAETSALQKCEGKIITFSTLRHRASLVDIALSSYYINGAPPDTLSLLEAYRMRFAAVITRVIPGKLLAHAIGVGTPTPGLFIQNTSPVDLCNGDYICLLPPVFGSADEIRLDSVGLEIVFPLTIPQTLMREIIAKVVARAVERTAAGRTPGELPGADVICYNGRRYELETNLQHRDGSDAAIRTLVLNLMFSINEGTTLILTLITRLLVQGAHDGYVNLLIQTANCVRETGQPMPRIQDGHRRFPIYEAISSWISTSSRLGDTLGTRAILRVCVFDGPSTVHPGDRTAVIQV
Tri1 Y 357 Human Alphaherpesvirus 3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAIVINRMNNIQINPTSIGNPQTIRLPLNNFKSTTQLIQQVSLTDFFRPDIEHAGSTVLILRHPTDLPHLARHRAPPGRQTERLAEAWGQLLEASESGCARAYVTSLSFIAACRAEEYTDKQAAEANRTAIVSAYGCSRMGARLIRFSECLRAMVQCHVFPHRFISFFGSLLEYTIQDNLCNITAVAKGPQEAARTDKTSTRRVTANIPACVFWDVDKDLHLSADGLKHVFLVFVYTQRRQREGVRLHLALSQLNEQCFGRGIGFLLGARICMYAAYTLIGTIPSESVRYTRRMERFGGYNVPTIWLEGVVWGGTNTWNECY
Tri1 D 357 Human Alphaherpesvirus 3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAIVINRMNNIQINPTSIGNPQTIRLPLNNFKSTTQLIQQVSLTDFFRPDIEHAGSTVLILRHPTDLPHLARHRAPPGRQTERLAEAWGQLLEASESGCARAYVTSLSFIAACRAEEYTDKQAAEANRTAIVSAYGCSRMGARLIRFSECLRAMVQCHVFPHRFISFFGSLLEYTIQDNLCNITAVAKGPQEAARTDKTSTRRVTANIPACVFWDVDKDLHLSADGLKHVFLVFVYTQRRQREGVRLHLALSQLNEQCFGRGIGFLLGARICMYAAYTLIGTIPSESVRYTRRMERFGGYNVPTIWLEGVVWGGTNTWNECY
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-12-01
Deposition Author(s): Lei, C. , Nan, W. , Xiangxi, W.