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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8X9B

Cryo-em structure of coxsackievirus a16 empty particle in complex with fab h1a6.2 (local refinement)

PDB DOI: 10.2210/pdb8x9b/pdb

Classification: VIRAL PROTEIN
Organism(s): Coxsackievirus A16 , Mus Musculus

Deposited: 2023-11-29
Deposition Author(s): Huang, Y. , Jiang, Y. , Li, S. , Xia, N. , Zheng, Q. , Zhu, R.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.82 Å

8x9b
Literature

Cryo-em structure of coxsackievirus a16 empty particle in complex with fab h1a6.2 (local refinement)

Huang, Y. , Jiang, Y. , Li, S. , Xia, N. , Zheng, Q. , Zhu, R.

Primary Citation of Related Structures: 8X9B


Proteins
Molecule Chains Sequence Length Organism Sequence
Capsid protein VP1 D 297 Coxsackievirus A16 , Mus Musculus GDPIADMIDQTVNNQVNRSLTALQVLPTAANTEASSHRLGTGVVPALQAAETGASSNASDKNLIETRCVLNHHSTQETAIGNFFSRAGLVSIITMPTTDTQNTDGYVNWDIDLMGYAQLRRKCELFTYMRFDAEFTFVVAKPNGVLVPQLLQYMYVPPGAPKPTSRDSFAWQTATNPSVFVKMTDPPAQVSVPFMSPASAYQWFYDGYPTFGEHLQANDLDYGQCPNNMMGTFSIRTVGTEKSPHSITLRVYMRIKHVRAWIPRPLRNQPYLFKTNPNYKGNDIKCTSTSRDKITTL
Capsid protein VP1 E 297 Coxsackievirus A16 , Mus Musculus GDPIADMIDQTVNNQVNRSLTALQVLPTAANTEASSHRLGTGVVPALQAAETGASSNASDKNLIETRCVLNHHSTQETAIGNFFSRAGLVSIITMPTTDTQNTDGYVNWDIDLMGYAQLRRKCELFTYMRFDAEFTFVVAKPNGVLVPQLLQYMYVPPGAPKPTSRDSFAWQTATNPSVFVKMTDPPAQVSVPFMSPASAYQWFYDGYPTFGEHLQANDLDYGQCPNNMMGTFSIRTVGTEKSPHSITLRVYMRIKHVRAWIPRPLRNQPYLFKTNPNYKGNDIKCTSTSRDKITTL
Capsid protein VP1 F 297 Coxsackievirus A16 , Mus Musculus GDPIADMIDQTVNNQVNRSLTALQVLPTAANTEASSHRLGTGVVPALQAAETGASSNASDKNLIETRCVLNHHSTQETAIGNFFSRAGLVSIITMPTTDTQNTDGYVNWDIDLMGYAQLRRKCELFTYMRFDAEFTFVVAKPNGVLVPQLLQYMYVPPGAPKPTSRDSFAWQTATNPSVFVKMTDPPAQVSVPFMSPASAYQWFYDGYPTFGEHLQANDLDYGQCPNNMMGTFSIRTVGTEKSPHSITLRVYMRIKHVRAWIPRPLRNQPYLFKTNPNYKGNDIKCTSTSRDKITTL
Capsid protein VP1 H 297 Coxsackievirus A16 , Mus Musculus GDPIADMIDQTVNNQVNRSLTALQVLPTAANTEASSHRLGTGVVPALQAAETGASSNASDKNLIETRCVLNHHSTQETAIGNFFSRAGLVSIITMPTTDTQNTDGYVNWDIDLMGYAQLRRKCELFTYMRFDAEFTFVVAKPNGVLVPQLLQYMYVPPGAPKPTSRDSFAWQTATNPSVFVKMTDPPAQVSVPFMSPASAYQWFYDGYPTFGEHLQANDLDYGQCPNNMMGTFSIRTVGTEKSPHSITLRVYMRIKHVRAWIPRPLRNQPYLFKTNPNYKGNDIKCTSTSRDKITTL
Genome polyprotein G 254 Coxsackievirus A16 , Mus Musculus SPSAEACGYSDRVAQLTIGNSTITTQEAANIVIAYGEWPEYCPDTDATAVDKPTRPDVSVNRFFTLDTKSWAKDSKGWYWKFPDVLTEVGVFGQNAQFHYLYRSGFCVHVQCNASKFHQGALLVAVLPEYVLGTIAGGTGNENSHPPYATTQPGQVGAVLTHPYVLDAGIPLSQLTVCPHQWINLRTNNCATIIVPYMNTVPFDSALNHCNFGLLVIPVVPLDFNAGATSEIPITVTIAPMCAEFAGLRQAVKQ
Genome polyprotein I 254 Coxsackievirus A16 , Mus Musculus SPSAEACGYSDRVAQLTIGNSTITTQEAANIVIAYGEWPEYCPDTDATAVDKPTRPDVSVNRFFTLDTKSWAKDSKGWYWKFPDVLTEVGVFGQNAQFHYLYRSGFCVHVQCNASKFHQGALLVAVLPEYVLGTIAGGTGNENSHPPYATTQPGQVGAVLTHPYVLDAGIPLSQLTVCPHQWINLRTNNCATIIVPYMNTVPFDSALNHCNFGLLVIPVVPLDFNAGATSEIPITVTIAPMCAEFAGLRQAVKQ
Genome polyprotein J 254 Coxsackievirus A16 , Mus Musculus SPSAEACGYSDRVAQLTIGNSTITTQEAANIVIAYGEWPEYCPDTDATAVDKPTRPDVSVNRFFTLDTKSWAKDSKGWYWKFPDVLTEVGVFGQNAQFHYLYRSGFCVHVQCNASKFHQGALLVAVLPEYVLGTIAGGTGNENSHPPYATTQPGQVGAVLTHPYVLDAGIPLSQLTVCPHQWINLRTNNCATIIVPYMNTVPFDSALNHCNFGLLVIPVVPLDFNAGATSEIPITVTIAPMCAEFAGLRQAVKQ
Genome polyprotein L 254 Coxsackievirus A16 , Mus Musculus SPSAEACGYSDRVAQLTIGNSTITTQEAANIVIAYGEWPEYCPDTDATAVDKPTRPDVSVNRFFTLDTKSWAKDSKGWYWKFPDVLTEVGVFGQNAQFHYLYRSGFCVHVQCNASKFHQGALLVAVLPEYVLGTIAGGTGNENSHPPYATTQPGQVGAVLTHPYVLDAGIPLSQLTVCPHQWINLRTNNCATIIVPYMNTVPFDSALNHCNFGLLVIPVVPLDFNAGATSEIPITVTIAPMCAEFAGLRQAVKQ
Genome polyprotein K 242 Coxsackievirus A16 , Mus Musculus GIPTELKPGTNQFLTTDDGVSAPILPGFHPTPPIHIPGEVHNLLEICRVETILEVNNLKTNETTPMQRLCFPVSVQSKTGELCAAFRADPGRDGPWQSTILGQLCRYYTQWSGSLEVTFMFAGSFMATGKMLIAYTPPGGNVPADRITAMLGTHVIWDFGLQSSVTLVVPWISNTHYRAHARAGYFDYYTTGIITIWYQTNYVVPIGAPTTAYIVALAAAQDNFTMKLCKDTEDIEQTANIQ
Genome polyprotein M 242 Coxsackievirus A16 , Mus Musculus GIPTELKPGTNQFLTTDDGVSAPILPGFHPTPPIHIPGEVHNLLEICRVETILEVNNLKTNETTPMQRLCFPVSVQSKTGELCAAFRADPGRDGPWQSTILGQLCRYYTQWSGSLEVTFMFAGSFMATGKMLIAYTPPGGNVPADRITAMLGTHVIWDFGLQSSVTLVVPWISNTHYRAHARAGYFDYYTTGIITIWYQTNYVVPIGAPTTAYIVALAAAQDNFTMKLCKDTEDIEQTANIQ
Genome polyprotein N 242 Coxsackievirus A16 , Mus Musculus GIPTELKPGTNQFLTTDDGVSAPILPGFHPTPPIHIPGEVHNLLEICRVETILEVNNLKTNETTPMQRLCFPVSVQSKTGELCAAFRADPGRDGPWQSTILGQLCRYYTQWSGSLEVTFMFAGSFMATGKMLIAYTPPGGNVPADRITAMLGTHVIWDFGLQSSVTLVVPWISNTHYRAHARAGYFDYYTTGIITIWYQTNYVVPIGAPTTAYIVALAAAQDNFTMKLCKDTEDIEQTANIQ
Genome polyprotein Q 242 Coxsackievirus A16 , Mus Musculus GIPTELKPGTNQFLTTDDGVSAPILPGFHPTPPIHIPGEVHNLLEICRVETILEVNNLKTNETTPMQRLCFPVSVQSKTGELCAAFRADPGRDGPWQSTILGQLCRYYTQWSGSLEVTFMFAGSFMATGKMLIAYTPPGGNVPADRITAMLGTHVIWDFGLQSSVTLVVPWISNTHYRAHARAGYFDYYTTGIITIWYQTNYVVPIGAPTTAYIVALAAAQDNFTMKLCKDTEDIEQTANIQ
The heavy chain of Fab h1A6.2 O 114 Coxsackievirus A16 , Mus Musculus EVQLVQSGAEVKKPGASVKVSCKASGFNIKDFYIHWVRQRPGQGLEWIGWIDPKVGNTMFDPKFQGKARITVDASISTAYLELSRLRSDDTAVYYCSRGAAAYWGQGTLVTVSS
The heavy chain of Fab h1A6.2 R 114 Coxsackievirus A16 , Mus Musculus EVQLVQSGAEVKKPGASVKVSCKASGFNIKDFYIHWVRQRPGQGLEWIGWIDPKVGNTMFDPKFQGKARITVDASISTAYLELSRLRSDDTAVYYCSRGAAAYWGQGTLVTVSS
The light chain of Fab h1A6.2 P 112 Coxsackievirus A16 , Mus Musculus AVVMTQTPLSLPVTLGQPASISCKSSQSLLYSDGKTYVNWFQQRPGQSPKRLIYLVSRLDSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCWQGTHLPYTFGQGTKLEIK
The light chain of Fab h1A6.2 S 112 Coxsackievirus A16 , Mus Musculus AVVMTQTPLSLPVTLGQPASISCKSSQSLLYSDGKTYVNWFQQRPGQSPKRLIYLVSRLDSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCWQGTHLPYTFGQGTKLEIK
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-11-29
Deposition Author(s): Huang, Y. , Jiang, Y. , Li, S. , Xia, N. , Zheng, Q. , Zhu, R.