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FASTA Sequence PDB Format mmCIF Format
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8X7K

Cryo-em structures of rnf168/ubch5c-ub in complex with h2ak13ub nucleosomes determined by activity-based chemical trapping strategy (adjacent h2ak13/15 dual-monoubiquitination)

PDB DOI: 10.2210/pdb8x7k/pdb

Classification: NUCLEAR PROTEIN/DNA
Organism(s): Homo Sapiens

Deposited: 2023-11-24
Deposition Author(s): Ai, H.S. , Deng, Z.H. , Liu, L. , Pan, M. , Tong, Z.B.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.27 Å

8x7k
Literature

Cryo-em structures of rnf168/ubch5c-ub in complex with h2ak13ub nucleosomes determined by activity-based chemical trapping strategy (adjacent h2ak13/15 dual-monoubiquitination)

Ai, H.S. , Deng, Z.H. , Liu, L. , Pan, M. , Tong, Z.B.

Primary Citation of Related Structures: 8X7K


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.2 A 97 Homo Sapiens PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLSAIHAKRVTIMPKDIQLARRIRGER
Histone H3.2 E 97 Homo Sapiens PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLSAIHAKRVTIMPKDIQLARRIRGER
Histone H4 B 82 Homo Sapiens KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG
Histone H4 F 82 Homo Sapiens KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG
Histone H2A type 1-B/E C 105 Homo Sapiens ACTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPK
Histone H2B type 1-K D 94 Homo Sapiens RSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA
Histone H2B type 1-K H 94 Homo Sapiens RSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA
Histone H2A type 1-B/E G 108 Homo Sapiens ARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLP
Ubiquitin-conjugating enzyme E2 D3 K 147 Homo Sapiens MALKRINKELSDLARDPPAQSSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSISSLLSDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM
E3 ubiquitin-protein ligase RNF168 L 113 Homo Sapiens MALPKDAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPRECKLRASGQESEEVADDYQPVRLLSKP

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (143-MER) i 143 NA CAGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTC
DNA (143-MER) j 143 NA GAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCTG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-11-24
Deposition Author(s): Ai, H.S. , Deng, Z.H. , Liu, L. , Pan, M. , Tong, Z.B.