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FASTA Sequence PDB Format mmCIF Format
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8X5V

Blcas9-sgrna-target dna complex

PDB DOI: 10.2210/pdb8x5v/pdb

Classification: RNA BINDING PROTEIN/RNA/DNA
Organism(s): Human Immunodeficiency Virus Type 1 Group M Subtype B (Isolate Ny5) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2023-11-19
Deposition Author(s): Nakagawa, R. , Nakane, T. , Nishimasu, H. , Nureki, O. , Yamashita, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2 Å

Literature

Blcas9-sgrna-target dna complex

Nakagawa, R. , Nakane, T. , Nishimasu, H. , Nureki, O. , Yamashita, K.

Primary Citation of Related Structures: 8X5V


Proteins
Molecule Chains Sequence Length Organism Sequence
BlCas9 A 933 Human Immunodeficiency Virus Type 1 Group M Subtype B (Isolate Ny5) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MAYTMGIDVGIASCGWAIVDLERQRIIDIGVRTFEKAENPKNGEALAVPRREARSSRRRLRRKKHRIERLKHMFVRNGLAVDIQHLEQTLRSQNEIDVWQLRVDGLDRMLTQKEWLRVLIHLAQRRGFQSNRKTDGSSEDGQVLVNVTENDRLMEEKDYRTVAEMMVKDEKFSDHKRNKNGNYHGVVSRSSLLVEIHTLFETQRQHHNSLASKDFELEYVNIWSAQRPVATKDQIEKMIGTCTFLPKEKRAPKASWHFQYFMLLQTINHIRITNVQGTRSLNKEEIEQVVNMALTKSKVSYHDTRKILDLSEEYQFVGLDYGKEDEKKKVESKETIIKLDDYHKLNKIFNEVELAKGETWEADDYDTVAYALTFFKDDEDIRDYLQNKYKDSKNRLVKNLANKEYTNELIGKVSTLSFRKVGHLSLKALRKIIPFLEQGMTYDKACQAAGFDFQGISKKKRSVVLPVIDQISNPVVNRALTQTRKVINALIKKYGSPETIHIETGGGSGGYITKYLSHFISTNLEFSPSDKKKKVVNTSGRITSHLRSRWGLEKNRGQNDLHHAMDAIVIAVTSDSFIQQVTNYYKRKERRELNGDDKFPLPWKFFREEVIARLSPNPKEQIEALPNHFYSEDELADLQPIFVSRMPKRSITGEAHQAQFRRVVGKTKEGKNITAKKTALVDISYDKNGDFNMYGRETDPATYEAIKERYLEFGGNVKKAFSTDLHKPKKDGTKGPLIKSVRIMENKTLVHPVNKGKGVVYNSSIVRTDVFQRKEKYYLLPVYVTDVTKGKLPNKVIVAKKGYHDWIEVDDSFTFLFSLYPNDLIFIRQNPKKKISLKKRIESHSISDSKEVQEIHAYYKGVDSSTAAIEFIIHDGSYYAKGVGVQNLDCFEKYQVDILGNYFKVKGEKRLELETSDSNHKGKDVNSIKSTSR

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (110-mer) b 110 NA GGAAAUUAGGUGCGCUUGGCGCUAUAGUUCCUUGAAAAAGUUGCUAUAGUAAGGGCAACAGACCCGAGGCGUUGGGGAUCGCCUAGCCCGUUUUUACGGGCUCUCCCCAU
DNA (28-mer) c 28 NA TTTGGAAAGCCAAGCGCACCTAATTTCC
DNA (8-mer) d 8 NA TTTCCAAA
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2023-11-19
Deposition Author(s): Nakagawa, R. , Nakane, T. , Nishimasu, H. , Nureki, O. , Yamashita, K.