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8WT8

Cryo-em structure of the is621 recombinase in complex with bridge rna, donor dna, and target dna in the post-strand exchange state (holliday junction intermediate)

PDB DOI: 10.2210/pdb8wt8/pdb

Classification: RECOMBINATION/RNA/DNA
Organism(s): Escherichia Coli , Synthetic Construct

Deposited: 2023-10-18
Deposition Author(s): Hiraizumi, M. , Nishimasu, H. , Yamashita, K.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

8wt8
Literature

Cryo-em structure of the is621 recombinase in complex with bridge rna, donor dna, and target dna in the post-strand exchange state (holliday junction intermediate)

Hiraizumi, M. , Nishimasu, H. , Yamashita, K.

Primary Citation of Related Structures: 8WT8


Proteins
Molecule Chains Sequence Length Organism Sequence
IS621 transposase A 328 Escherichia Coli , Synthetic Construct GPMEHELHYIGIDTAKEKLDVDVLRPDGRHRTKKFANTTKGHDELVSWLKGHKIDHAHICIEATGTYMEPVAECLYDAGYIVSVINPALGKAFAQSEGLRNKTDTVDARMLAEFCRQKRPAAWEAPHPLERALRALVVRHQALTDMHTQELNRTETAREVQRPSIDAHLLWLEAELKRLEKQIKDLTDDDPDMKHRRKLLESIPGIGEKTSAVLLAYIGLKDRFAHARQFAAFAGLTPRRYESGSSVRGASRMSKAGHVSLRRALYMPAMVATSKTEWGRAFRDRLAANGKKGKVILGAMMRKLAQVAYGVLKSGVPFDASRHNPVAA
IS621 transposase B 328 Escherichia Coli , Synthetic Construct GPMEHELHYIGIDTAKEKLDVDVLRPDGRHRTKKFANTTKGHDELVSWLKGHKIDHAHICIEATGTYMEPVAECLYDAGYIVSVINPALGKAFAQSEGLRNKTDTVDARMLAEFCRQKRPAAWEAPHPLERALRALVVRHQALTDMHTQELNRTETAREVQRPSIDAHLLWLEAELKRLEKQIKDLTDDDPDMKHRRKLLESIPGIGEKTSAVLLAYIGLKDRFAHARQFAAFAGLTPRRYESGSSVRGASRMSKAGHVSLRRALYMPAMVATSKTEWGRAFRDRLAANGKKGKVILGAMMRKLAQVAYGVLKSGVPFDASRHNPVAA
IS621 transposase C 328 Escherichia Coli , Synthetic Construct GPMEHELHYIGIDTAKEKLDVDVLRPDGRHRTKKFANTTKGHDELVSWLKGHKIDHAHICIEATGTYMEPVAECLYDAGYIVSVINPALGKAFAQSEGLRNKTDTVDARMLAEFCRQKRPAAWEAPHPLERALRALVVRHQALTDMHTQELNRTETAREVQRPSIDAHLLWLEAELKRLEKQIKDLTDDDPDMKHRRKLLESIPGIGEKTSAVLLAYIGLKDRFAHARQFAAFAGLTPRRYESGSSVRGASRMSKAGHVSLRRALYMPAMVATSKTEWGRAFRDRLAANGKKGKVILGAMMRKLAQVAYGVLKSGVPFDASRHNPVAA
IS621 transposase D 328 Escherichia Coli , Synthetic Construct GPMEHELHYIGIDTAKEKLDVDVLRPDGRHRTKKFANTTKGHDELVSWLKGHKIDHAHICIEATGTYMEPVAECLYDAGYIVSVINPALGKAFAQSEGLRNKTDTVDARMLAEFCRQKRPAAWEAPHPLERALRALVVRHQALTDMHTQELNRTETAREVQRPSIDAHLLWLEAELKRLEKQIKDLTDDDPDMKHRRKLLESIPGIGEKTSAVLLAYIGLKDRFAHARQFAAFAGLTPRRYESGSSVRGASRMSKAGHVSLRRALYMPAMVATSKTEWGRAFRDRLAANGKKGKVILGAMMRKLAQVAYGVLKSGVPFDASRHNPVAA

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
bridge RNA e 180 NA GGGAGUGCAGAGAAAAUCGGCCAGUUUUCUCUGCCUGCAGUCCGCAUGCCGUAUCGGGCCUUGGGUUCUAACCUGUUCUGUAGAUUUAUGCAGCGGACUGCCUUUCUCCCAAAGUGAUAAACCGGACAGUAUCAUGGACCGGUUUUCCCGGUAAUCCGUAUUUACAAGGCUGGUUUCACU
bridge RNA f 180 NA GGGAGUGCAGAGAAAAUCGGCCAGUUUUCUCUGCCUGCAGUCCGCAUGCCGUAUCGGGCCUUGGGUUCUAACCUGUUCUGUAGAUUUAUGCAGCGGACUGCCUUUCUCCCAAAGUGAUAAACCGGACAGUAUCAUGGACCGGUUUUCCCGGUAAUCCGUAUUUACAAGGCUGGUUUCACU
target DNA-donor DNA g 49 NA GCCGGGTAATACCACCAAGCCGCCTTGTATTATCCCTCCAGTGCAGAGA
target DNA h 38 NA CGAGCTCATCTGTAGGCCCGATGGTGGTATTACCCGGC
donor DNA-target DNA i 33 NA TGCAGGCCATAAGTCAATCTACAGATGAGCTCG
donor DNA j 44 NA TCTCTGCACTGGAGGGATAATACAAGATACTGTTATGGCCTGCA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-10-18
Deposition Author(s): Hiraizumi, M. , Nishimasu, H. , Yamashita, K.