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8WT6

Cryo-em structure of the is621 recombinase in complex with bridge rna, donor dna, and target dna in the pre-strand exchange state

PDB DOI: 10.2210/pdb8wt6/pdb

Classification: RECOMBINATION/DNA/RNA
Organism(s): Escherichia Coli , Synthetic Construct

Deposited: 2023-10-18
Deposition Author(s): Hiraizumi, M. , Nishimasu, H. , Yamashita, K.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.5 Å

Literature

Cryo-em structure of the is621 recombinase in complex with bridge rna, donor dna, and target dna in the pre-strand exchange state

Hiraizumi, M. , Nishimasu, H. , Yamashita, K.

Primary Citation of Related Structures: 8WT6


Proteins
Molecule Chains Sequence Length Organism Sequence
IS621 transposase A 328 Escherichia Coli , Synthetic Construct GPMEHELHYIGIDTAKEKLDVDVLRPDGRHRTKKFANTTKGHDELVSWLKGHKIDHAHICIEATGTYMEPVAECLYDAGYIVSVINPALGKAFAQSEGLRNKTDTVDARMLAEFCRQKRPAAWEAPHPLERALRALVVRHQALTDMHTQELNRTETAREVQRPSIDAHLLWLEAELKRLEKQIKDLTDDDPDMKHRRKLLESIPGIGEKTSAVLLAYIGLKDRFAHARQFAAFAGLTPRRYESGSSVRGASRMSKAGHVSLRRALYMPAMVATSKTEWGRAFRDRLAANGKKGKVILGAMMRKLAQVAYGVLKSGVPFDASRHNPVAA
IS621 transposase B 328 Escherichia Coli , Synthetic Construct GPMEHELHYIGIDTAKEKLDVDVLRPDGRHRTKKFANTTKGHDELVSWLKGHKIDHAHICIEATGTYMEPVAECLYDAGYIVSVINPALGKAFAQSEGLRNKTDTVDARMLAEFCRQKRPAAWEAPHPLERALRALVVRHQALTDMHTQELNRTETAREVQRPSIDAHLLWLEAELKRLEKQIKDLTDDDPDMKHRRKLLESIPGIGEKTSAVLLAYIGLKDRFAHARQFAAFAGLTPRRYESGSSVRGASRMSKAGHVSLRRALYMPAMVATSKTEWGRAFRDRLAANGKKGKVILGAMMRKLAQVAYGVLKSGVPFDASRHNPVAA
IS621 transposase C 328 Escherichia Coli , Synthetic Construct GPMEHELHYIGIDTAKEKLDVDVLRPDGRHRTKKFANTTKGHDELVSWLKGHKIDHAHICIEATGTYMEPVAECLYDAGYIVSVINPALGKAFAQSEGLRNKTDTVDARMLAEFCRQKRPAAWEAPHPLERALRALVVRHQALTDMHTQELNRTETAREVQRPSIDAHLLWLEAELKRLEKQIKDLTDDDPDMKHRRKLLESIPGIGEKTSAVLLAYIGLKDRFAHARQFAAFAGLTPRRYESGSSVRGASRMSKAGHVSLRRALYMPAMVATSKTEWGRAFRDRLAANGKKGKVILGAMMRKLAQVAYGVLKSGVPFDASRHNPVAA
IS621 transposase D 328 Escherichia Coli , Synthetic Construct GPMEHELHYIGIDTAKEKLDVDVLRPDGRHRTKKFANTTKGHDELVSWLKGHKIDHAHICIEATGTYMEPVAECLYDAGYIVSVINPALGKAFAQSEGLRNKTDTVDARMLAEFCRQKRPAAWEAPHPLERALRALVVRHQALTDMHTQELNRTETAREVQRPSIDAHLLWLEAELKRLEKQIKDLTDDDPDMKHRRKLLESIPGIGEKTSAVLLAYIGLKDRFAHARQFAAFAGLTPRRYESGSSVRGASRMSKAGHVSLRRALYMPAMVATSKTEWGRAFRDRLAANGKKGKVILGAMMRKLAQVAYGVLKSGVPFDASRHNPVAA

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
bridge RNA e 180 NA GGGAGUGCAGAGAAAAUCGGCCAGUUUUCUCUGCCUGCAGUCCGCAUGCCGUAUCGGGCCUUGGGUUCUAACCUGUUGCGUAGAUUUAUGCAGCGGACUGCCUUUCUCCCAAAGUGAUAAACCGGACAGUAUCAUGGACCGGUUUUCCCGGUAAUCCGUAUUUGCAAGGUUGGUUUCACU
bridge RNA f 180 NA GGGAGUGCAGAGAAAAUCGGCCAGUUUUCUCUGCCUGCAGUCCGCAUGCCGUAUCGGGCCUUGGGUUCUAACCUGUUGCGUAGAUUUAUGCAGCGGACUGCCUUUCUCCCAAAGUGAUAAACCGGACAGUAUCAUGGACCGGUUUUCCCGGUAAUCCGUAUUUGCAAGGUUGGUUUCACU
target DNA g 38 NA GCCGGGTAATACCACCAAGTCTTCTACAGATGAGCTCG
target DNA h 38 NA CGAGCTCATCTGTAGGCCTGATGGTGGTATTACCCGGC
donor DNA i 44 NA TGCAGGCCATAAGTCATACTTGTATTATCCCTCCAGTGCAGAGA
donor DNA j 44 NA TCTCTGCACTGGAGGGATAATACAAGATACTGTTATGGCCTGCA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-10-18
Deposition Author(s): Hiraizumi, M. , Nishimasu, H. , Yamashita, K.