8WR4
Structure of cbcas9-pcriic1 complex bound to 62-bp dna substrate (non-targeting complex)
PDB DOI: 10.2210/pdb8wr4/pdb
Classification: DNA BINDING PROTEIN/DNA/RNA Organism(s): Chryseobacterium , Synthetic Construct
Deposited: 2023-10-13 Deposition Author(s): Lin, S. , Liu, J.J.G. , Zhang, S.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.07 Å
Structure of cbcas9-pcriic1 complex bound to 62-bp dna substrate (non-targeting complex)
Lin, S. , Liu, J.J.G. , Zhang, S.
Primary Citation of Related Structures: 8WR4
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| CbCas9 effector-1 | A | 1442 | Chryseobacterium , Synthetic Construct | MIKNILGLALGTNSIGWALVKQDFENKQGEILGMGSRIIPMSQDILGDFGKGNSVSQTAERTKYRSVRRLRERFLLRRERLHRVLYILNFLPEHYASQIDFEKRLGKFKVETEPKLVWKNTDGQFSFLFQNSFNEMLEDFKAAGQELKIPYDWTIYHLRKKAISQKIEKEELAWILLNFNHKRGYYQLRGEDFEEEKDKTFVRLKVDRIVDSGENVKGKILYDVYFENGWKYDKQVVKTEDWVDRTKEFIVSESILKNGETKRTFKAVDSEKDWIAIKTKTEQEIEHSHKTVGTYIYETLLQNPKQKIKGKLVRTIERKFYKEELRQILEKQKEFHQELQSDDLYNDCIRELYRNNEVHQLTLRKKDFVHLFMEDIIFYQRPLRSQKSSVSNCTLEFRKYKGENGAEHTQYLKAIPKSNPYYQEFRLWQWIFNLNLYTKDNDENVTKVFLNTTQDFENLFEFLNTRKEVDQKALLKHFKLNEKTHRWNFVEDKKYPCNETKTMISSRLDKVENISDDFLTRDIEQKIWHIIYSVNDKVEYEKALKSFARKHHLDESSFFEAFRKFPPFKSEYGSFSEKAIKKLLPLMRLGKYWNYAEIDKYSRERIQKIITGEYDENIKDKVREKSVHLTIENDFQGLQLWLAQYIVYGRHSEASMIGKWNSANDLEVFLKDFKQHSLRNPIVEQVITETLRVVKDIWLKYGNGTKDFFNEIHIELGREMKLPADDRKKLTNQITENENTNLRIKALLAEMMNDHSVENVRPFSPMQQEILKIYEDGVLKSDIEIEDDILKISKTAQPSSSDLKRYKLWLEQKYKSPYTGQIIPLNKLFTPEYEIEAIIPQSRYFDDSFSNKIICESAVNKLKDNYIGLGFIKQFGGTIIELGFGKSVKVFDTEEYEDFVKKHYANNRGKRNKLLMEDIPEKMIERQLNDTRYISKYISGILSNIVRVEDGSDEGVNSKNIVPGNGKITTQLKQDWGLNDVWNDLILPRFERMNQLTNSKDFTAWNENHQKFLPTVPIEFSKGFSKKRIDHRHHALDALVIACATTDHVNLLNNQSAKSDTKRYDLKKKLMKFEKVVYHHTQTGEKIEREIPKQFLKPWEKFTVDAKHNLESIIVSFKQNLRVINKATNYYEKYVEKDGTKNKERVEQAGTNWAIRKPMHKDTVSGKVDLPWVKVPKGKILTATRKSLDSSFDLKSIGSITDTGIQKILKNYLAFKDGNPELAFSPEGIDDLNKNIEKYNDGKPHQPINKVRVFELGSKFQVGQTGNKKGKYVEAAKGTNLFFAVYEDEKGKRSYETIPLNEVIERQKQGLTSVPLENEKGSRLLFDLSPNDLVYVPEIDENIDSNFVFSNLNKEKISRIYKVEKTSGTECYFVRQDIAYLIKQYDAKTKIGELESQNKLQVTMTDDRIRITDTCVKINCDRLGNINFITKEKIKQIFNEFR |
| CbCas9 effector-1 | B | 1442 | Chryseobacterium , Synthetic Construct | MIKNILGLALGTNSIGWALVKQDFENKQGEILGMGSRIIPMSQDILGDFGKGNSVSQTAERTKYRSVRRLRERFLLRRERLHRVLYILNFLPEHYASQIDFEKRLGKFKVETEPKLVWKNTDGQFSFLFQNSFNEMLEDFKAAGQELKIPYDWTIYHLRKKAISQKIEKEELAWILLNFNHKRGYYQLRGEDFEEEKDKTFVRLKVDRIVDSGENVKGKILYDVYFENGWKYDKQVVKTEDWVDRTKEFIVSESILKNGETKRTFKAVDSEKDWIAIKTKTEQEIEHSHKTVGTYIYETLLQNPKQKIKGKLVRTIERKFYKEELRQILEKQKEFHQELQSDDLYNDCIRELYRNNEVHQLTLRKKDFVHLFMEDIIFYQRPLRSQKSSVSNCTLEFRKYKGENGAEHTQYLKAIPKSNPYYQEFRLWQWIFNLNLYTKDNDENVTKVFLNTTQDFENLFEFLNTRKEVDQKALLKHFKLNEKTHRWNFVEDKKYPCNETKTMISSRLDKVENISDDFLTRDIEQKIWHIIYSVNDKVEYEKALKSFARKHHLDESSFFEAFRKFPPFKSEYGSFSEKAIKKLLPLMRLGKYWNYAEIDKYSRERIQKIITGEYDENIKDKVREKSVHLTIENDFQGLQLWLAQYIVYGRHSEASMIGKWNSANDLEVFLKDFKQHSLRNPIVEQVITETLRVVKDIWLKYGNGTKDFFNEIHIELGREMKLPADDRKKLTNQITENENTNLRIKALLAEMMNDHSVENVRPFSPMQQEILKIYEDGVLKSDIEIEDDILKISKTAQPSSSDLKRYKLWLEQKYKSPYTGQIIPLNKLFTPEYEIEAIIPQSRYFDDSFSNKIICESAVNKLKDNYIGLGFIKQFGGTIIELGFGKSVKVFDTEEYEDFVKKHYANNRGKRNKLLMEDIPEKMIERQLNDTRYISKYISGILSNIVRVEDGSDEGVNSKNIVPGNGKITTQLKQDWGLNDVWNDLILPRFERMNQLTNSKDFTAWNENHQKFLPTVPIEFSKGFSKKRIDHRHHALDALVIACATTDHVNLLNNQSAKSDTKRYDLKKKLMKFEKVVYHHTQTGEKIEREIPKQFLKPWEKFTVDAKHNLESIIVSFKQNLRVINKATNYYEKYVEKDGTKNKERVEQAGTNWAIRKPMHKDTVSGKVDLPWVKVPKGKILTATRKSLDSSFDLKSIGSITDTGIQKILKNYLAFKDGNPELAFSPEGIDDLNKNIEKYNDGKPHQPINKVRVFELGSKFQVGQTGNKKGKYVEAAKGTNLFFAVYEDEKGKRSYETIPLNEVIERQKQGLTSVPLENEKGSRLLFDLSPNDLVYVPEIDENIDSNFVFSNLNKEKISRIYKVEKTSGTECYFVRQDIAYLIKQYDAKTKIGELESQNKLQVTMTDDRIRITDTCVKINCDRLGNINFITKEKIKQIFNEFR |
| PcrIIC1 | G | 136 | Chryseobacterium , Synthetic Construct | MSLDKIAIDTNILLYAYDNRDLDKQDRAVEILLKKPFVTQLVVFEFIKVLERRFKMDKKEITKLTIKLLKEVIIPLSLHRDIYNYSQFLLQRYNFGLSDILVLSDSILNNCTILLSEDMCNGMIVDKKLKIVNPFL |
| PcrIIC1 | H | 136 | Chryseobacterium , Synthetic Construct | MSLDKIAIDTNILLYAYDNRDLDKQDRAVEILLKKPFVTQLVVFEFIKVLERRFKMDKKEITKLTIKLLKEVIIPLSLHRDIYNYSQFLLQRYNFGLSDILVLSDSILNNCTILLSEDMCNGMIVDKKLKIVNPFL |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (62-MER) | f | 62 | NA | CCAGGTGCTCAATTTAGCTATCTCTCCTCGGCTCCCCGACATTCTCTGGCATCCTTCCACTC |
| sgRNA effector-2 | n | 127 | NA | GCCUCAUCGUAACAGCCGAGGUUGUGAAUUGCUUUCAAAAAUUAUUGAGAAAUAAUUUUGAAAAGCAAUUCACAAUAAGGAUUAUUCCGUUGUGAAAACAUUCAAGGCGGGGCAACUCGCCUUUUUU |
| sgRNA effector-2 | o | 127 | NA | GCCUCAUCGUAACAGCCGAGGUUGUGAAUUGCUUUCAAAAAUUAUUGAGAAAUAAUUUUGAAAAGCAAUUCACAAUAAGGAUUAUUCCGUUGUGAAAACAUUCAAGGCGGGGCAACUCGCCUUUUUU |
| DNA (62-MER) | s | 62 | NA | GAGTGGAAGGATGCCAGAGAATGTCGGGGAGCCGAGGAGAGATAGCTAAATTGAGCACCTGG |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-10-13 Deposition Author(s): Lin, S. , Liu, J.J.G. , Zhang, S.