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8WPW

Cryo-em structure of sars-cov-2 xbb.1.5 receptor-binding domain (rbd) complexed with cb6 mutant,s309, and s304 antibodies

PDB DOI: 10.2210/pdb8wpw/pdb

Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Organism(s): Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2023-10-10
Deposition Author(s): Gao, G.F. , Qi, J.X. , Su, C.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.49 Å

8wpw
Literature

Cryo-em structure of sars-cov-2 xbb.1.5 receptor-binding domain (rbd) complexed with cb6 mutant,s309, and s304 antibodies

Gao, G.F. , Qi, J.X. , Su, C.

Primary Citation of Related Structures: 8WPW


Proteins
Molecule Chains Sequence Length Organism Sequence
S309 fab heavy chain A 239 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVQSGAEVKKPGASVKVSCKASGYPFTSYGISWVRQAPGQGLEWMGWISTYNGNTNYAQKFQGRVTMTTDTSTTTGYMELRRLRSDDTAVYYCARDYTRGAWFGESLIGGFDNWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHHHHHH
S309 fab light chain B 215 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 EIVLTQSPGTLSLSPGERATLSCRASQTVSSTSLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQHDTSLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECS
CB6 fab mutant heavy chain C 231 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 EVQLVESGGGLVQPGGSLRLSCAASEFIVSYNYMSWVRQAPGKGLEWVSVIYPGGSTFYADSVKGRFTISRDNSMNTLFLQMNSLRAEDTAVYYCARVLPINGYYLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHHHHHH
CB6 fab mutant light chain D 216 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 DIVMTQSPSSLSASVGDRVTITCRASQSIAYYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSSDPPEYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECS
S304 fab heavy chain H 232 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVESGGGLVQPGGSLRLSCAASGFTFSSYDMHWVRQTTGKGLEWVSTIGTAGDTYYPDSVKGRFTISREDAKNSLYLQMNSLRAGDTAVYYCARGDSSGYYYYFDYWGQGTLLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHHHHHH
S304 fab light chain L 216 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 DIQMTQSPSSLSAAVGDRVTITCRASQSIGSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFAIYYCQQSYVSPTYTFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECS
Spike protein S1 R 229 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 RVQPTESIVRFPNITNLCPFHEVFNATTFASVYAWNRKRISNCVADYSVIYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIRGNEVSQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKPSGNYNYLYRLFRKSKLKPFERDISTEIYQAGNKPCNGVAGPNCYSPLQSYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFHHHHHH
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-10-10
Deposition Author(s): Gao, G.F. , Qi, J.X. , Su, C.