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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8WP2

Mapsparta tetramer bound with guide-target

PDB DOI: 10.2210/pdb8wp2/pdb

Classification: RNA BINDING PROTEIN/DNA/RNA
Organism(s): Maribacter Polysiphoniae , Synthetic Construct

Deposited: 2023-10-08
Deposition Author(s): Chen, M.R. , Guo, L.J. , Huang, P.P. , Li, Z.X. , Xiao, Y.B.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.3 Å

8wp2
Literature

Mapsparta tetramer bound with guide-target

Chen, M.R. , Guo, L.J. , Huang, P.P. , Li, Z.X. , Xiao, Y.B.

Primary Citation of Related Structures: 8WP2


Proteins
Molecule Chains Sequence Length Organism Sequence
Piwi domain-containing protein A 507 Maribacter Polysiphoniae , Synthetic Construct MKELIYIEEPKILFAHGQKCTDARDGLALFGPLNNLYGIKSGVIGTKQGLKIFRDYLDHIQKPIYNSNSITRPMFPGFEAVFDCKWESTGITFKEVTNEDIGKFLYNSSTHKRTYDLVSLFIDKIISANKNEDENVDVWFVIVPDEIYKYCRPNSVLPKEMVQTKALMSKSKAKSFRYEPSLFPDINIELKEQEKEAETYNYDAQFHDQFKARLLKHTIPTQIFRESTLAWRDFKNAFGLPIRDFSKIEGHLAWTISTAAFYKAGGKPWKLSDVRNGVCYLGLVYKKVEKSKNPRNACCAAQMFLDNGDGTVFKGEVGPWYNPKNGQYHLEPKEAKALLSQSLQSYKEQIGEYPKEVFIHAKTRFNHQEWDAFLEVTPKETNLVGVTISKTKPLKLYKTEGDYTILRGNAYVVNERSAFLWTVGYVPKIQTALSMEVPNPLFIEINKGEADIKQVLKDILSLTKLNYNACIFADGEPVTLRFADKIGEILTASTDIKTPPLAFKYYI
Piwi domain-containing protein C 507 Maribacter Polysiphoniae , Synthetic Construct MKELIYIEEPKILFAHGQKCTDARDGLALFGPLNNLYGIKSGVIGTKQGLKIFRDYLDHIQKPIYNSNSITRPMFPGFEAVFDCKWESTGITFKEVTNEDIGKFLYNSSTHKRTYDLVSLFIDKIISANKNEDENVDVWFVIVPDEIYKYCRPNSVLPKEMVQTKALMSKSKAKSFRYEPSLFPDINIELKEQEKEAETYNYDAQFHDQFKARLLKHTIPTQIFRESTLAWRDFKNAFGLPIRDFSKIEGHLAWTISTAAFYKAGGKPWKLSDVRNGVCYLGLVYKKVEKSKNPRNACCAAQMFLDNGDGTVFKGEVGPWYNPKNGQYHLEPKEAKALLSQSLQSYKEQIGEYPKEVFIHAKTRFNHQEWDAFLEVTPKETNLVGVTISKTKPLKLYKTEGDYTILRGNAYVVNERSAFLWTVGYVPKIQTALSMEVPNPLFIEINKGEADIKQVLKDILSLTKLNYNACIFADGEPVTLRFADKIGEILTASTDIKTPPLAFKYYI
Piwi domain-containing protein I 507 Maribacter Polysiphoniae , Synthetic Construct MKELIYIEEPKILFAHGQKCTDARDGLALFGPLNNLYGIKSGVIGTKQGLKIFRDYLDHIQKPIYNSNSITRPMFPGFEAVFDCKWESTGITFKEVTNEDIGKFLYNSSTHKRTYDLVSLFIDKIISANKNEDENVDVWFVIVPDEIYKYCRPNSVLPKEMVQTKALMSKSKAKSFRYEPSLFPDINIELKEQEKEAETYNYDAQFHDQFKARLLKHTIPTQIFRESTLAWRDFKNAFGLPIRDFSKIEGHLAWTISTAAFYKAGGKPWKLSDVRNGVCYLGLVYKKVEKSKNPRNACCAAQMFLDNGDGTVFKGEVGPWYNPKNGQYHLEPKEAKALLSQSLQSYKEQIGEYPKEVFIHAKTRFNHQEWDAFLEVTPKETNLVGVTISKTKPLKLYKTEGDYTILRGNAYVVNERSAFLWTVGYVPKIQTALSMEVPNPLFIEINKGEADIKQVLKDILSLTKLNYNACIFADGEPVTLRFADKIGEILTASTDIKTPPLAFKYYI
Piwi domain-containing protein K 507 Maribacter Polysiphoniae , Synthetic Construct MKELIYIEEPKILFAHGQKCTDARDGLALFGPLNNLYGIKSGVIGTKQGLKIFRDYLDHIQKPIYNSNSITRPMFPGFEAVFDCKWESTGITFKEVTNEDIGKFLYNSSTHKRTYDLVSLFIDKIISANKNEDENVDVWFVIVPDEIYKYCRPNSVLPKEMVQTKALMSKSKAKSFRYEPSLFPDINIELKEQEKEAETYNYDAQFHDQFKARLLKHTIPTQIFRESTLAWRDFKNAFGLPIRDFSKIEGHLAWTISTAAFYKAGGKPWKLSDVRNGVCYLGLVYKKVEKSKNPRNACCAAQMFLDNGDGTVFKGEVGPWYNPKNGQYHLEPKEAKALLSQSLQSYKEQIGEYPKEVFIHAKTRFNHQEWDAFLEVTPKETNLVGVTISKTKPLKLYKTEGDYTILRGNAYVVNERSAFLWTVGYVPKIQTALSMEVPNPLFIEINKGEADIKQVLKDILSLTKLNYNACIFADGEPVTLRFADKIGEILTASTDIKTPPLAFKYYI
TIR domain-containing protein B 452 Maribacter Polysiphoniae , Synthetic Construct MRNKIFISHATPDDNDFTRWLALKLIGLGYEVWCDILFLDKGVDFWSNIEKVIREDTCKFLLVSSSYSNQREGVLKELAVAAKVKKQLKDDKFIIPLAIDEQLSYDDINIDIVRLNAIDFKMSWARGLKDILEAFEKQKVPKEVADASKSNLLYQQIFLHDKSVIEKEEIYDSNWLSILSFPEELRFHEYNWMLPKRFDVRELTFPAVRYKNYLCTFAWAYDFTYHLPKTETYHKSKTIRIPTEEILSGSYDSNFIRNAECKRLIVQLLNKAFELRMKDKEVQEYEMSNKTAYWLEKGKLEKDKFEKTMLVGKQKDKNWHFAISGASKLYPFPVLMISSHIFFTADGKKLIDSSSVQHSSRRRQGKNWWNNTWRTKLLAFIKYLSDDDTSFYLEMGSEEKVFVSNEPVKFKGNVSYNIPEKNTLEEEAELSGFNQGEDIEELEELIENLEAE
TIR domain-containing protein D 452 Maribacter Polysiphoniae , Synthetic Construct MRNKIFISHATPDDNDFTRWLALKLIGLGYEVWCDILFLDKGVDFWSNIEKVIREDTCKFLLVSSSYSNQREGVLKELAVAAKVKKQLKDDKFIIPLAIDEQLSYDDINIDIVRLNAIDFKMSWARGLKDILEAFEKQKVPKEVADASKSNLLYQQIFLHDKSVIEKEEIYDSNWLSILSFPEELRFHEYNWMLPKRFDVRELTFPAVRYKNYLCTFAWAYDFTYHLPKTETYHKSKTIRIPTEEILSGSYDSNFIRNAECKRLIVQLLNKAFELRMKDKEVQEYEMSNKTAYWLEKGKLEKDKFEKTMLVGKQKDKNWHFAISGASKLYPFPVLMISSHIFFTADGKKLIDSSSVQHSSRRRQGKNWWNNTWRTKLLAFIKYLSDDDTSFYLEMGSEEKVFVSNEPVKFKGNVSYNIPEKNTLEEEAELSGFNQGEDIEELEELIENLEAE
TIR domain-containing protein J 452 Maribacter Polysiphoniae , Synthetic Construct MRNKIFISHATPDDNDFTRWLALKLIGLGYEVWCDILFLDKGVDFWSNIEKVIREDTCKFLLVSSSYSNQREGVLKELAVAAKVKKQLKDDKFIIPLAIDEQLSYDDINIDIVRLNAIDFKMSWARGLKDILEAFEKQKVPKEVADASKSNLLYQQIFLHDKSVIEKEEIYDSNWLSILSFPEELRFHEYNWMLPKRFDVRELTFPAVRYKNYLCTFAWAYDFTYHLPKTETYHKSKTIRIPTEEILSGSYDSNFIRNAECKRLIVQLLNKAFELRMKDKEVQEYEMSNKTAYWLEKGKLEKDKFEKTMLVGKQKDKNWHFAISGASKLYPFPVLMISSHIFFTADGKKLIDSSSVQHSSRRRQGKNWWNNTWRTKLLAFIKYLSDDDTSFYLEMGSEEKVFVSNEPVKFKGNVSYNIPEKNTLEEEAELSGFNQGEDIEELEELIENLEAE
TIR domain-containing protein L 452 Maribacter Polysiphoniae , Synthetic Construct MRNKIFISHATPDDNDFTRWLALKLIGLGYEVWCDILFLDKGVDFWSNIEKVIREDTCKFLLVSSSYSNQREGVLKELAVAAKVKKQLKDDKFIIPLAIDEQLSYDDINIDIVRLNAIDFKMSWARGLKDILEAFEKQKVPKEVADASKSNLLYQQIFLHDKSVIEKEEIYDSNWLSILSFPEELRFHEYNWMLPKRFDVRELTFPAVRYKNYLCTFAWAYDFTYHLPKTETYHKSKTIRIPTEEILSGSYDSNFIRNAECKRLIVQLLNKAFELRMKDKEVQEYEMSNKTAYWLEKGKLEKDKFEKTMLVGKQKDKNWHFAISGASKLYPFPVLMISSHIFFTADGKKLIDSSSVQHSSRRRQGKNWWNNTWRTKLLAFIKYLSDDDTSFYLEMGSEEKVFVSNEPVKFKGNVSYNIPEKNTLEEEAELSGFNQGEDIEELEELIENLEAE

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (5'-R(P*UP*GP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*AP*GP*U)-3') e 21 NA UGACGGCUCUAAUCUAUUAGU
RNA (5'-R(P*UP*GP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*AP*GP*U)-3') g 21 NA UGACGGCUCUAAUCUAUUAGU
RNA (5'-R(P*UP*GP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*AP*GP*U)-3') m 21 NA UGACGGCUCUAAUCUAUUAGU
RNA (5'-R(P*UP*GP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*AP*GP*U)-3') o 21 NA UGACGGCUCUAAUCUAUUAGU
DNA (25-MER) f 25 NA CAACTAATAGATTAGAGCCGTCAAT
DNA (25-MER) h 25 NA CAACTAATAGATTAGAGCCGTCAAT
DNA (25-MER) n 25 NA CAACTAATAGATTAGAGCCGTCAAT
DNA (25-MER) p 25 NA CAACTAATAGATTAGAGCCGTCAAT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-10-08
Deposition Author(s): Chen, M.R. , Guo, L.J. , Huang, P.P. , Li, Z.X. , Xiao, Y.B.