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FASTA Sequence PDB Format mmCIF Format
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8WMM

Structure of cbcas9-pcriic1 complex bound to 28-bp dna substrate (20-nt complementary)

PDB DOI: 10.2210/pdb8wmm/pdb

Classification: DNA BINDING PROTEIN/DNA/RNA
Organism(s): Chryseobacterium , Synthetic Construct

Deposited: 2023-10-04
Deposition Author(s): Lin, S. , Liu, J.J.G. , Zhang, S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.98 Å

8wmm
Literature

Structure of cbcas9-pcriic1 complex bound to 28-bp dna substrate (20-nt complementary)

Lin, S. , Liu, J.J.G. , Zhang, S.

Primary Citation of Related Structures: 8WMM


Proteins
Molecule Chains Sequence Length Organism Sequence
deadCbCas9 A 1442 Chryseobacterium , Synthetic Construct MIKNILGLALGTNSIGWALVKQDFENKQGEILGMGSRIIPMSQDILGDFGKGNSVSQTAERTKYRSVRRLRERFLLRRERLHRVLYILNFLPEHYASQIDFEKRLGKFKVETEPKLVWKNTDGQFSFLFQNSFNEMLEDFKAAGQELKIPYDWTIYHLRKKAISQKIEKEELAWILLNFNHKRGYYQLRGEDFEEEKDKTFVRLKVDRIVDSGENVKGKILYDVYFENGWKYDKQVVKTEDWVDRTKEFIVSESILKNGETKRTFKAVDSEKDWIAIKTKTEQEIEHSHKTVGTYIYETLLQNPKQKIKGKLVRTIERKFYKEELRQILEKQKEFHQELQSDDLYNDCIRELYRNNEVHQLTLRKKDFVHLFMEDIIFYQRPLRSQKSSVSNCTLEFRKYKGENGAEHTQYLKAIPKSNPYYQEFRLWQWIFNLNLYTKDNDENVTKVFLNTTQDFENLFEFLNTRKEVDQKALLKHFKLNEKTHRWNFVEDKKYPCNETKTMISSRLDKVENISDDFLTRDIEQKIWHIIYSVNDKVEYEKALKSFARKHHLDESSFFEAFRKFPPFKSEYGSFSEKAIKKLLPLMRLGKYWNYAEIDKYSRERIQKIITGEYDENIKDKVREKSVHLTIENDFQGLQLWLAQYIVYGRHSEASMIGKWNSANDLEVFLKDFKQHSLRNPIVEQVITETLRVVKDIWLKYGNGTKDFFNEIHIELGREMKLPADDRKKLTNQITENENTNLRIKALLAEMMNDHSVENVRPFSPMQQEILKIYEDGVLKSDIEIEDDILKISKTAQPSSSDLKRYKLWLEQKYKSPYTGQIIPLNKLFTPEYEIEAIIPQSRYFDDSFSNKIICESAVNKLKDNYIGLGFIKQFGGTIIELGFGKSVKVFDTEEYEDFVKKHYANNRGKRNKLLMEDIPEKMIERQLNDTRYISKYISGILSNIVRVEDGSDEGVNSKNIVPGNGKITTQLKQDWGLNDVWNDLILPRFERMNQLTNSKDFTAWNENHQKFLPTVPIEFSKGFSKKRIDHRHHALDALVIACATTDHVNLLNNQSAKSDTKRYDLKKKLMKFEKVVYHHTQTGEKIEREIPKQFLKPWEKFTVDAKHNLESIIVSFKQNLRVINKATNYYEKYVEKDGTKNKERVEQAGTNWAIRKPMHKDTVSGKVDLPWVKVPKGKILTATRKSLDSSFDLKSIGSITDTGIQKILKNYLAFKDGNPELAFSPEGIDDLNKNIEKYNDGKPHQPINKVRVFELGSKFQVGQTGNKKGKYVEAAKGTNLFFAVYEDEKGKRSYETIPLNEVIERQKQGLTSVPLENEKGSRLLFDLSPNDLVYVPEIDENIDSNFVFSNLNKEKISRIYKVEKTSGTECYFVRQDIAYLIKQYDAKTKIGELESQNKLQVTMTDDRIRITDTCVKINCDRLGNINFITKEKIKQIFNEFR
deadCbCas9 B 1442 Chryseobacterium , Synthetic Construct MIKNILGLALGTNSIGWALVKQDFENKQGEILGMGSRIIPMSQDILGDFGKGNSVSQTAERTKYRSVRRLRERFLLRRERLHRVLYILNFLPEHYASQIDFEKRLGKFKVETEPKLVWKNTDGQFSFLFQNSFNEMLEDFKAAGQELKIPYDWTIYHLRKKAISQKIEKEELAWILLNFNHKRGYYQLRGEDFEEEKDKTFVRLKVDRIVDSGENVKGKILYDVYFENGWKYDKQVVKTEDWVDRTKEFIVSESILKNGETKRTFKAVDSEKDWIAIKTKTEQEIEHSHKTVGTYIYETLLQNPKQKIKGKLVRTIERKFYKEELRQILEKQKEFHQELQSDDLYNDCIRELYRNNEVHQLTLRKKDFVHLFMEDIIFYQRPLRSQKSSVSNCTLEFRKYKGENGAEHTQYLKAIPKSNPYYQEFRLWQWIFNLNLYTKDNDENVTKVFLNTTQDFENLFEFLNTRKEVDQKALLKHFKLNEKTHRWNFVEDKKYPCNETKTMISSRLDKVENISDDFLTRDIEQKIWHIIYSVNDKVEYEKALKSFARKHHLDESSFFEAFRKFPPFKSEYGSFSEKAIKKLLPLMRLGKYWNYAEIDKYSRERIQKIITGEYDENIKDKVREKSVHLTIENDFQGLQLWLAQYIVYGRHSEASMIGKWNSANDLEVFLKDFKQHSLRNPIVEQVITETLRVVKDIWLKYGNGTKDFFNEIHIELGREMKLPADDRKKLTNQITENENTNLRIKALLAEMMNDHSVENVRPFSPMQQEILKIYEDGVLKSDIEIEDDILKISKTAQPSSSDLKRYKLWLEQKYKSPYTGQIIPLNKLFTPEYEIEAIIPQSRYFDDSFSNKIICESAVNKLKDNYIGLGFIKQFGGTIIELGFGKSVKVFDTEEYEDFVKKHYANNRGKRNKLLMEDIPEKMIERQLNDTRYISKYISGILSNIVRVEDGSDEGVNSKNIVPGNGKITTQLKQDWGLNDVWNDLILPRFERMNQLTNSKDFTAWNENHQKFLPTVPIEFSKGFSKKRIDHRHHALDALVIACATTDHVNLLNNQSAKSDTKRYDLKKKLMKFEKVVYHHTQTGEKIEREIPKQFLKPWEKFTVDAKHNLESIIVSFKQNLRVINKATNYYEKYVEKDGTKNKERVEQAGTNWAIRKPMHKDTVSGKVDLPWVKVPKGKILTATRKSLDSSFDLKSIGSITDTGIQKILKNYLAFKDGNPELAFSPEGIDDLNKNIEKYNDGKPHQPINKVRVFELGSKFQVGQTGNKKGKYVEAAKGTNLFFAVYEDEKGKRSYETIPLNEVIERQKQGLTSVPLENEKGSRLLFDLSPNDLVYVPEIDENIDSNFVFSNLNKEKISRIYKVEKTSGTECYFVRQDIAYLIKQYDAKTKIGELESQNKLQVTMTDDRIRITDTCVKINCDRLGNINFITKEKIKQIFNEFR
PcrIIC1 G 136 Chryseobacterium , Synthetic Construct MSLDKIAIDTNILLYAYDNRDLDKQDRAVEILLKKPFVTQLVVFEFIKVLERRFKMDKKEITKLTIKLLKEVIIPLSLHRDIYNYSQFLLQRYNFGLSDILVLSDSILNNCTILLSEDMCNGMIVDKKLKIVNPFL
PcrIIC1 H 136 Chryseobacterium , Synthetic Construct MSLDKIAIDTNILLYAYDNRDLDKQDRAVEILLKKPFVTQLVVFEFIKVLERRFKMDKKEITKLTIKLLKEVIIPLSLHRDIYNYSQFLLQRYNFGLSDILVLSDSILNNCTILLSEDMCNGMIVDKKLKIVNPFL

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
TS c 28 NA CGTTTTGTCTCGGCTCCCCGACATTCTC
TS f 28 NA CGTTTTGTCTCGGCTCCCCGACATTCTC
sgRNA d 127 NA GAGAAUGUCGGGGAGCCGAGGUUGUGAAUUGCUUUCAAAAAUUAUUGAGAAAUAAUUUUGAAAAGCAAUUCACAAUAAGGAUUAUUCCGUUGUGAAAACAUUCAAGGCGGGGCAACUCGCCUUUUUU
sgRNA o 127 NA GAGAAUGUCGGGGAGCCGAGGUUGUGAAUUGCUUUCAAAAAUUAUUGAGAAAUAAUUUUGAAAAGCAAUUCACAAUAAGGAUUAUUCCGUUGUGAAAACAUUCAAGGCGGGGCAACUCGCCUUUUUU
NTS s 28 NA GAGAATGTCGGGGAGCCGAGACAAAACG
NTS y 28 NA GAGAATGTCGGGGAGCCGAGACAAAACG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-10-04
Deposition Author(s): Lin, S. , Liu, J.J.G. , Zhang, S.