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FASTA Sequence PDB Format mmCIF Format
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8WLD

Cryo-em structure of sir2/hera antiphage complex

PDB DOI: 10.2210/pdb8wld/pdb

Classification: IMMUNE SYSTEM
Organism(s): Paenibacillus Sp. 453Mf

Deposited: 2023-09-29
Deposition Author(s): Li, X. , Li, Z. , Liao, F. , Yu, G. , Zhang, H.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.48 Å

8wld
Literature

Cryo-em structure of sir2/hera antiphage complex

Li, X. , Li, Z. , Liao, F. , Yu, G. , Zhang, H.

Primary Citation of Related Structures: 8WLD


Proteins
Molecule Chains Sequence Length Organism Sequence
SIR2-like domain-containing protein S 381 Paenibacillus Sp. 453Mf MDHSITASYYDTTQQLSLLKHVLSEDKRPIAFIIAAGCPVSIRHNDAPLIPDVAGLTRKISDSFGGNPDSLLMKIIQNLKTTIPNPTIEDILSYIRLLQQIPMSGKIHDVENSVINALEESICELIEEEVNVDLPGNATPYHKIAAWINSINREHQVEIFTTNYDLLMEQALEELNVPYFDGFVGSKRAFFDIRTIEENKLPSRWSKLWKLHGSINWQLDKQTQTIWRGTPSKGCSLIHPSHLKYDQSRKMPYLVMMDQLKLFLNQPSAILITCGYSYKDQHINEVLSQGLQTNPNALIYGLQYDVLENYQEAKDMALKRSNLILLAKDRAIIGKKEGEWKPDPQSSQDNDPLLFFKLGDFQHLASFLEEISQYDWSKQND
SIR2-like domain-containing protein T 381 Paenibacillus Sp. 453Mf MDHSITASYYDTTQQLSLLKHVLSEDKRPIAFIIAAGCPVSIRHNDAPLIPDVAGLTRKISDSFGGNPDSLLMKIIQNLKTTIPNPTIEDILSYIRLLQQIPMSGKIHDVENSVINALEESICELIEEEVNVDLPGNATPYHKIAAWINSINREHQVEIFTTNYDLLMEQALEELNVPYFDGFVGSKRAFFDIRTIEENKLPSRWSKLWKLHGSINWQLDKQTQTIWRGTPSKGCSLIHPSHLKYDQSRKMPYLVMMDQLKLFLNQPSAILITCGYSYKDQHINEVLSQGLQTNPNALIYGLQYDVLENYQEAKDMALKRSNLILLAKDRAIIGKKEGEWKPDPQSSQDNDPLLFFKLGDFQHLASFLEEISQYDWSKQND
SIR2-like domain-containing protein K 381 Paenibacillus Sp. 453Mf MDHSITASYYDTTQQLSLLKHVLSEDKRPIAFIIAAGCPVSIRHNDAPLIPDVAGLTRKISDSFGGNPDSLLMKIIQNLKTTIPNPTIEDILSYIRLLQQIPMSGKIHDVENSVINALEESICELIEEEVNVDLPGNATPYHKIAAWINSINREHQVEIFTTNYDLLMEQALEELNVPYFDGFVGSKRAFFDIRTIEENKLPSRWSKLWKLHGSINWQLDKQTQTIWRGTPSKGCSLIHPSHLKYDQSRKMPYLVMMDQLKLFLNQPSAILITCGYSYKDQHINEVLSQGLQTNPNALIYGLQYDVLENYQEAKDMALKRSNLILLAKDRAIIGKKEGEWKPDPQSSQDNDPLLFFKLGDFQHLASFLEEISQYDWSKQND
SIR2-like domain-containing protein J 381 Paenibacillus Sp. 453Mf MDHSITASYYDTTQQLSLLKHVLSEDKRPIAFIIAAGCPVSIRHNDAPLIPDVAGLTRKISDSFGGNPDSLLMKIIQNLKTTIPNPTIEDILSYIRLLQQIPMSGKIHDVENSVINALEESICELIEEEVNVDLPGNATPYHKIAAWINSINREHQVEIFTTNYDLLMEQALEELNVPYFDGFVGSKRAFFDIRTIEENKLPSRWSKLWKLHGSINWQLDKQTQTIWRGTPSKGCSLIHPSHLKYDQSRKMPYLVMMDQLKLFLNQPSAILITCGYSYKDQHINEVLSQGLQTNPNALIYGLQYDVLENYQEAKDMALKRSNLILLAKDRAIIGKKEGEWKPDPQSSQDNDPLLFFKLGDFQHLASFLEEISQYDWSKQND
SIR2-like domain-containing protein R 381 Paenibacillus Sp. 453Mf MDHSITASYYDTTQQLSLLKHVLSEDKRPIAFIIAAGCPVSIRHNDAPLIPDVAGLTRKISDSFGGNPDSLLMKIIQNLKTTIPNPTIEDILSYIRLLQQIPMSGKIHDVENSVINALEESICELIEEEVNVDLPGNATPYHKIAAWINSINREHQVEIFTTNYDLLMEQALEELNVPYFDGFVGSKRAFFDIRTIEENKLPSRWSKLWKLHGSINWQLDKQTQTIWRGTPSKGCSLIHPSHLKYDQSRKMPYLVMMDQLKLFLNQPSAILITCGYSYKDQHINEVLSQGLQTNPNALIYGLQYDVLENYQEAKDMALKRSNLILLAKDRAIIGKKEGEWKPDPQSSQDNDPLLFFKLGDFQHLASFLEEISQYDWSKQND
SIR2-like domain-containing protein P 381 Paenibacillus Sp. 453Mf MDHSITASYYDTTQQLSLLKHVLSEDKRPIAFIIAAGCPVSIRHNDAPLIPDVAGLTRKISDSFGGNPDSLLMKIIQNLKTTIPNPTIEDILSYIRLLQQIPMSGKIHDVENSVINALEESICELIEEEVNVDLPGNATPYHKIAAWINSINREHQVEIFTTNYDLLMEQALEELNVPYFDGFVGSKRAFFDIRTIEENKLPSRWSKLWKLHGSINWQLDKQTQTIWRGTPSKGCSLIHPSHLKYDQSRKMPYLVMMDQLKLFLNQPSAILITCGYSYKDQHINEVLSQGLQTNPNALIYGLQYDVLENYQEAKDMALKRSNLILLAKDRAIIGKKEGEWKPDPQSSQDNDPLLFFKLGDFQHLASFLEEISQYDWSKQND
SIR2-like domain-containing protein Q 381 Paenibacillus Sp. 453Mf MDHSITASYYDTTQQLSLLKHVLSEDKRPIAFIIAAGCPVSIRHNDAPLIPDVAGLTRKISDSFGGNPDSLLMKIIQNLKTTIPNPTIEDILSYIRLLQQIPMSGKIHDVENSVINALEESICELIEEEVNVDLPGNATPYHKIAAWINSINREHQVEIFTTNYDLLMEQALEELNVPYFDGFVGSKRAFFDIRTIEENKLPSRWSKLWKLHGSINWQLDKQTQTIWRGTPSKGCSLIHPSHLKYDQSRKMPYLVMMDQLKLFLNQPSAILITCGYSYKDQHINEVLSQGLQTNPNALIYGLQYDVLENYQEAKDMALKRSNLILLAKDRAIIGKKEGEWKPDPQSSQDNDPLLFFKLGDFQHLASFLEEISQYDWSKQND
SIR2-like domain-containing protein H 381 Paenibacillus Sp. 453Mf MDHSITASYYDTTQQLSLLKHVLSEDKRPIAFIIAAGCPVSIRHNDAPLIPDVAGLTRKISDSFGGNPDSLLMKIIQNLKTTIPNPTIEDILSYIRLLQQIPMSGKIHDVENSVINALEESICELIEEEVNVDLPGNATPYHKIAAWINSINREHQVEIFTTNYDLLMEQALEELNVPYFDGFVGSKRAFFDIRTIEENKLPSRWSKLWKLHGSINWQLDKQTQTIWRGTPSKGCSLIHPSHLKYDQSRKMPYLVMMDQLKLFLNQPSAILITCGYSYKDQHINEVLSQGLQTNPNALIYGLQYDVLENYQEAKDMALKRSNLILLAKDRAIIGKKEGEWKPDPQSSQDNDPLLFFKLGDFQHLASFLEEISQYDWSKQND
SIR2-like domain-containing protein E 381 Paenibacillus Sp. 453Mf MDHSITASYYDTTQQLSLLKHVLSEDKRPIAFIIAAGCPVSIRHNDAPLIPDVAGLTRKISDSFGGNPDSLLMKIIQNLKTTIPNPTIEDILSYIRLLQQIPMSGKIHDVENSVINALEESICELIEEEVNVDLPGNATPYHKIAAWINSINREHQVEIFTTNYDLLMEQALEELNVPYFDGFVGSKRAFFDIRTIEENKLPSRWSKLWKLHGSINWQLDKQTQTIWRGTPSKGCSLIHPSHLKYDQSRKMPYLVMMDQLKLFLNQPSAILITCGYSYKDQHINEVLSQGLQTNPNALIYGLQYDVLENYQEAKDMALKRSNLILLAKDRAIIGKKEGEWKPDPQSSQDNDPLLFFKLGDFQHLASFLEEISQYDWSKQND
Helicase HerA central domain-containing protein O 696 Paenibacillus Sp. 453Mf MIGVNRMTEASTYIGTVQDVNGANIRVVLDINTISSLKFVDGQGYRIGQIGSFVRIPIGYINLFGIVSQVGAGAVPDKLLEVEPYGHRWISVQLVGEEGIKKEFERGVSQYPTIGDKVHIVTEPDLKKIYGTQNKKYISLGNIASVDSIPALVNIDTLVTRHSAVLGSTGSGKSTTVTSILQRISDMSQFPSARIIVFDIHGEYAAAFKGKAKVYKVTPSNNELKLSIPYWALTCDEFLSVAFGGLEGSGRNALIDKIYELKLQTLKRQEYEGINEDSLTVDTPIPFSIHKLWFDLYRAEISTHYVQGSHSEENEALLLGEDGNPVQKGDSLKVVPPIYMPHTQAQGATKIYLSNRGKNIRKPLEGLASLLKDPRYEFLFNADDWSVNLDGKTNKDLDALLETWVGSEESISIFDLSGMPSSILDTLIGILIRILYDSLFWSRNQPEGGRERPLLVVLEEAHTYLGKDSRGIAIDGVRKIVKEGRKYGIGMMLVSQRPSEIDSTILSQCGTLFALRMNNSSDRNHVLGAVSDSFEGLMGMLPTLRTGEAIIIGESVRLPMRTIISPPPFGRRPDSLDPDVTAKWSNNRVQGDYKEVLTLWRQKKVRSQRIVENIKRLPVVNEGEMTDMVREMVTSSNILSIGYEADSMTLEIEFNHGLVYQYYDVPETLHTELLAAESHGKFFNSQIKNNYRFSRI
Helicase HerA central domain-containing protein A 696 Paenibacillus Sp. 453Mf MIGVNRMTEASTYIGTVQDVNGANIRVVLDINTISSLKFVDGQGYRIGQIGSFVRIPIGYINLFGIVSQVGAGAVPDKLLEVEPYGHRWISVQLVGEEGIKKEFERGVSQYPTIGDKVHIVTEPDLKKIYGTQNKKYISLGNIASVDSIPALVNIDTLVTRHSAVLGSTGSGKSTTVTSILQRISDMSQFPSARIIVFDIHGEYAAAFKGKAKVYKVTPSNNELKLSIPYWALTCDEFLSVAFGGLEGSGRNALIDKIYELKLQTLKRQEYEGINEDSLTVDTPIPFSIHKLWFDLYRAEISTHYVQGSHSEENEALLLGEDGNPVQKGDSLKVVPPIYMPHTQAQGATKIYLSNRGKNIRKPLEGLASLLKDPRYEFLFNADDWSVNLDGKTNKDLDALLETWVGSEESISIFDLSGMPSSILDTLIGILIRILYDSLFWSRNQPEGGRERPLLVVLEEAHTYLGKDSRGIAIDGVRKIVKEGRKYGIGMMLVSQRPSEIDSTILSQCGTLFALRMNNSSDRNHVLGAVSDSFEGLMGMLPTLRTGEAIIIGESVRLPMRTIISPPPFGRRPDSLDPDVTAKWSNNRVQGDYKEVLTLWRQKKVRSQRIVENIKRLPVVNEGEMTDMVREMVTSSNILSIGYEADSMTLEIEFNHGLVYQYYDVPETLHTELLAAESHGKFFNSQIKNNYRFSRI
Helicase HerA central domain-containing protein D 696 Paenibacillus Sp. 453Mf MIGVNRMTEASTYIGTVQDVNGANIRVVLDINTISSLKFVDGQGYRIGQIGSFVRIPIGYINLFGIVSQVGAGAVPDKLLEVEPYGHRWISVQLVGEEGIKKEFERGVSQYPTIGDKVHIVTEPDLKKIYGTQNKKYISLGNIASVDSIPALVNIDTLVTRHSAVLGSTGSGKSTTVTSILQRISDMSQFPSARIIVFDIHGEYAAAFKGKAKVYKVTPSNNELKLSIPYWALTCDEFLSVAFGGLEGSGRNALIDKIYELKLQTLKRQEYEGINEDSLTVDTPIPFSIHKLWFDLYRAEISTHYVQGSHSEENEALLLGEDGNPVQKGDSLKVVPPIYMPHTQAQGATKIYLSNRGKNIRKPLEGLASLLKDPRYEFLFNADDWSVNLDGKTNKDLDALLETWVGSEESISIFDLSGMPSSILDTLIGILIRILYDSLFWSRNQPEGGRERPLLVVLEEAHTYLGKDSRGIAIDGVRKIVKEGRKYGIGMMLVSQRPSEIDSTILSQCGTLFALRMNNSSDRNHVLGAVSDSFEGLMGMLPTLRTGEAIIIGESVRLPMRTIISPPPFGRRPDSLDPDVTAKWSNNRVQGDYKEVLTLWRQKKVRSQRIVENIKRLPVVNEGEMTDMVREMVTSSNILSIGYEADSMTLEIEFNHGLVYQYYDVPETLHTELLAAESHGKFFNSQIKNNYRFSRI
Helicase HerA central domain-containing protein L 696 Paenibacillus Sp. 453Mf MIGVNRMTEASTYIGTVQDVNGANIRVVLDINTISSLKFVDGQGYRIGQIGSFVRIPIGYINLFGIVSQVGAGAVPDKLLEVEPYGHRWISVQLVGEEGIKKEFERGVSQYPTIGDKVHIVTEPDLKKIYGTQNKKYISLGNIASVDSIPALVNIDTLVTRHSAVLGSTGSGKSTTVTSILQRISDMSQFPSARIIVFDIHGEYAAAFKGKAKVYKVTPSNNELKLSIPYWALTCDEFLSVAFGGLEGSGRNALIDKIYELKLQTLKRQEYEGINEDSLTVDTPIPFSIHKLWFDLYRAEISTHYVQGSHSEENEALLLGEDGNPVQKGDSLKVVPPIYMPHTQAQGATKIYLSNRGKNIRKPLEGLASLLKDPRYEFLFNADDWSVNLDGKTNKDLDALLETWVGSEESISIFDLSGMPSSILDTLIGILIRILYDSLFWSRNQPEGGRERPLLVVLEEAHTYLGKDSRGIAIDGVRKIVKEGRKYGIGMMLVSQRPSEIDSTILSQCGTLFALRMNNSSDRNHVLGAVSDSFEGLMGMLPTLRTGEAIIIGESVRLPMRTIISPPPFGRRPDSLDPDVTAKWSNNRVQGDYKEVLTLWRQKKVRSQRIVENIKRLPVVNEGEMTDMVREMVTSSNILSIGYEADSMTLEIEFNHGLVYQYYDVPETLHTELLAAESHGKFFNSQIKNNYRFSRI
Helicase HerA central domain-containing protein M 696 Paenibacillus Sp. 453Mf MIGVNRMTEASTYIGTVQDVNGANIRVVLDINTISSLKFVDGQGYRIGQIGSFVRIPIGYINLFGIVSQVGAGAVPDKLLEVEPYGHRWISVQLVGEEGIKKEFERGVSQYPTIGDKVHIVTEPDLKKIYGTQNKKYISLGNIASVDSIPALVNIDTLVTRHSAVLGSTGSGKSTTVTSILQRISDMSQFPSARIIVFDIHGEYAAAFKGKAKVYKVTPSNNELKLSIPYWALTCDEFLSVAFGGLEGSGRNALIDKIYELKLQTLKRQEYEGINEDSLTVDTPIPFSIHKLWFDLYRAEISTHYVQGSHSEENEALLLGEDGNPVQKGDSLKVVPPIYMPHTQAQGATKIYLSNRGKNIRKPLEGLASLLKDPRYEFLFNADDWSVNLDGKTNKDLDALLETWVGSEESISIFDLSGMPSSILDTLIGILIRILYDSLFWSRNQPEGGRERPLLVVLEEAHTYLGKDSRGIAIDGVRKIVKEGRKYGIGMMLVSQRPSEIDSTILSQCGTLFALRMNNSSDRNHVLGAVSDSFEGLMGMLPTLRTGEAIIIGESVRLPMRTIISPPPFGRRPDSLDPDVTAKWSNNRVQGDYKEVLTLWRQKKVRSQRIVENIKRLPVVNEGEMTDMVREMVTSSNILSIGYEADSMTLEIEFNHGLVYQYYDVPETLHTELLAAESHGKFFNSQIKNNYRFSRI
Helicase HerA central domain-containing protein N 696 Paenibacillus Sp. 453Mf MIGVNRMTEASTYIGTVQDVNGANIRVVLDINTISSLKFVDGQGYRIGQIGSFVRIPIGYINLFGIVSQVGAGAVPDKLLEVEPYGHRWISVQLVGEEGIKKEFERGVSQYPTIGDKVHIVTEPDLKKIYGTQNKKYISLGNIASVDSIPALVNIDTLVTRHSAVLGSTGSGKSTTVTSILQRISDMSQFPSARIIVFDIHGEYAAAFKGKAKVYKVTPSNNELKLSIPYWALTCDEFLSVAFGGLEGSGRNALIDKIYELKLQTLKRQEYEGINEDSLTVDTPIPFSIHKLWFDLYRAEISTHYVQGSHSEENEALLLGEDGNPVQKGDSLKVVPPIYMPHTQAQGATKIYLSNRGKNIRKPLEGLASLLKDPRYEFLFNADDWSVNLDGKTNKDLDALLETWVGSEESISIFDLSGMPSSILDTLIGILIRILYDSLFWSRNQPEGGRERPLLVVLEEAHTYLGKDSRGIAIDGVRKIVKEGRKYGIGMMLVSQRPSEIDSTILSQCGTLFALRMNNSSDRNHVLGAVSDSFEGLMGMLPTLRTGEAIIIGESVRLPMRTIISPPPFGRRPDSLDPDVTAKWSNNRVQGDYKEVLTLWRQKKVRSQRIVENIKRLPVVNEGEMTDMVREMVTSSNILSIGYEADSMTLEIEFNHGLVYQYYDVPETLHTELLAAESHGKFFNSQIKNNYRFSRI
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-09-29
Deposition Author(s): Li, X. , Li, Z. , Liao, F. , Yu, G. , Zhang, H.