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FASTA Sequence PDB Format mmCIF Format
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8WKS

Cryo-em structure of dsr2-tube complex

PDB DOI: 10.2210/pdb8wks/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Bacillus Subtilis Subsp. Natto (Strain Best195) , Siphoviridae Sp. Ct0106

Deposited: 2023-09-28
Deposition Author(s): Gao, A. , Huang, J. , Zhu, K.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.58 Å

8wks
Literature

Cryo-em structure of dsr2-tube complex

Gao, A. , Huang, J. , Zhu, K.

Primary Citation of Related Structures: 8WKS


Proteins
Molecule Chains Sequence Length Organism Sequence
SIR2-like domain-containing protein A 1004 Bacillus Subtilis Subsp. Natto (Strain Best195) , Siphoviridae Sp. Ct0106 VKVDLESKRYGEKLKEVFLMLDNNVVECIKEITESSRNGKLVFFVGAGVSTLSDYPQWWRLVDKYHEELYGSPKKGNYSSDEYLRIPQIFYNVKGEMAFDGILKDFFQVDKPTNPIHDKILAMNPAHVITTNYDNLIDTACWKRGKYFSVISAEEDVANATSSRYLLKVAGDFRKGFKGENVVLKEDDYLNYDQNYPLISNLMKTIIATHTIVFIGYGLGDYNINMLLNWVRKLQKDSFHKPFFIRTDPSPIENETLIYYENKGLRIIDAASLIDSNEYDYLERYSAVMDLLIESQENKFITKDDEVIDYIYGKISPLFALQYIRKIDLKHVFEYDYHFEVNGTVVRHKNKGFGYMERFFELKESCDERSKLSKKQYERFNALFNFFEKNGVICMAKDAGTLNTSIEINSLAYHGKYDVMKKFIEEQSVSIEDDYKKAFFLACLGRWEESYDLYSNIILNSIDESNGCVYYLSQINRYRIYQSITQAVTQFNGLGLLTFGRHYKPFTDEFLARIEREMTNFNIDDLFNGMPFEFQKKYKILEFLSDNQFLYDDTVKLFELTNKVRSEMSEGSYSFGMSSDIVVLLRLYDNLRFLYENCLWSVSFHEFHQYIRNSMSLLIEKAEYERTRDIDELGFSFFGKKSGFFMEYYDFVNISRHFKIDDIKNLERSCSIDKIRFGEQEKIEEYLVGIAEEITKQFSANGMNVVFYTQFISEAKAALYFAKYVKLSEEGLGKIVKALLFYFPERDLDIGKRYVWLERLTKCNELPKSIISIIDDFLVLQAEKHIDQNYSEVSSNGLYSRDYGALIKHFEKNFISKRLSEITLCLTQDKQKQIDFLFKLLPLLSTNAKSHLLSFKSVENINDLMNGIRIGLIDEFTPEHEELIIEYLETRKVNYIVEKEKGIQTFSSNDYMSTFGIWYFLEEINNSKMEEFIGMDDQYDFFVDPENFDYKKFIPSWLKNYNDKLLGKIAGNKHMKHHVIEVLKERVKNSNDKRYLEILMNYFI
SIR2-like domain-containing protein D 1004 Bacillus Subtilis Subsp. Natto (Strain Best195) , Siphoviridae Sp. Ct0106 VKVDLESKRYGEKLKEVFLMLDNNVVECIKEITESSRNGKLVFFVGAGVSTLSDYPQWWRLVDKYHEELYGSPKKGNYSSDEYLRIPQIFYNVKGEMAFDGILKDFFQVDKPTNPIHDKILAMNPAHVITTNYDNLIDTACWKRGKYFSVISAEEDVANATSSRYLLKVAGDFRKGFKGENVVLKEDDYLNYDQNYPLISNLMKTIIATHTIVFIGYGLGDYNINMLLNWVRKLQKDSFHKPFFIRTDPSPIENETLIYYENKGLRIIDAASLIDSNEYDYLERYSAVMDLLIESQENKFITKDDEVIDYIYGKISPLFALQYIRKIDLKHVFEYDYHFEVNGTVVRHKNKGFGYMERFFELKESCDERSKLSKKQYERFNALFNFFEKNGVICMAKDAGTLNTSIEINSLAYHGKYDVMKKFIEEQSVSIEDDYKKAFFLACLGRWEESYDLYSNIILNSIDESNGCVYYLSQINRYRIYQSITQAVTQFNGLGLLTFGRHYKPFTDEFLARIEREMTNFNIDDLFNGMPFEFQKKYKILEFLSDNQFLYDDTVKLFELTNKVRSEMSEGSYSFGMSSDIVVLLRLYDNLRFLYENCLWSVSFHEFHQYIRNSMSLLIEKAEYERTRDIDELGFSFFGKKSGFFMEYYDFVNISRHFKIDDIKNLERSCSIDKIRFGEQEKIEEYLVGIAEEITKQFSANGMNVVFYTQFISEAKAALYFAKYVKLSEEGLGKIVKALLFYFPERDLDIGKRYVWLERLTKCNELPKSIISIIDDFLVLQAEKHIDQNYSEVSSNGLYSRDYGALIKHFEKNFISKRLSEITLCLTQDKQKQIDFLFKLLPLLSTNAKSHLLSFKSVENINDLMNGIRIGLIDEFTPEHEELIIEYLETRKVNYIVEKEKGIQTFSSNDYMSTFGIWYFLEEINNSKMEEFIGMDDQYDFFVDPENFDYKKFIPSWLKNYNDKLLGKIAGNKHMKHHVIEVLKERVKNSNDKRYLEILMNYFI
SIR2-like domain-containing protein F 1004 Bacillus Subtilis Subsp. Natto (Strain Best195) , Siphoviridae Sp. Ct0106 VKVDLESKRYGEKLKEVFLMLDNNVVECIKEITESSRNGKLVFFVGAGVSTLSDYPQWWRLVDKYHEELYGSPKKGNYSSDEYLRIPQIFYNVKGEMAFDGILKDFFQVDKPTNPIHDKILAMNPAHVITTNYDNLIDTACWKRGKYFSVISAEEDVANATSSRYLLKVAGDFRKGFKGENVVLKEDDYLNYDQNYPLISNLMKTIIATHTIVFIGYGLGDYNINMLLNWVRKLQKDSFHKPFFIRTDPSPIENETLIYYENKGLRIIDAASLIDSNEYDYLERYSAVMDLLIESQENKFITKDDEVIDYIYGKISPLFALQYIRKIDLKHVFEYDYHFEVNGTVVRHKNKGFGYMERFFELKESCDERSKLSKKQYERFNALFNFFEKNGVICMAKDAGTLNTSIEINSLAYHGKYDVMKKFIEEQSVSIEDDYKKAFFLACLGRWEESYDLYSNIILNSIDESNGCVYYLSQINRYRIYQSITQAVTQFNGLGLLTFGRHYKPFTDEFLARIEREMTNFNIDDLFNGMPFEFQKKYKILEFLSDNQFLYDDTVKLFELTNKVRSEMSEGSYSFGMSSDIVVLLRLYDNLRFLYENCLWSVSFHEFHQYIRNSMSLLIEKAEYERTRDIDELGFSFFGKKSGFFMEYYDFVNISRHFKIDDIKNLERSCSIDKIRFGEQEKIEEYLVGIAEEITKQFSANGMNVVFYTQFISEAKAALYFAKYVKLSEEGLGKIVKALLFYFPERDLDIGKRYVWLERLTKCNELPKSIISIIDDFLVLQAEKHIDQNYSEVSSNGLYSRDYGALIKHFEKNFISKRLSEITLCLTQDKQKQIDFLFKLLPLLSTNAKSHLLSFKSVENINDLMNGIRIGLIDEFTPEHEELIIEYLETRKVNYIVEKEKGIQTFSSNDYMSTFGIWYFLEEINNSKMEEFIGMDDQYDFFVDPENFDYKKFIPSWLKNYNDKLLGKIAGNKHMKHHVIEVLKERVKNSNDKRYLEILMNYFI
SIR2-like domain-containing protein H 1004 Bacillus Subtilis Subsp. Natto (Strain Best195) , Siphoviridae Sp. Ct0106 VKVDLESKRYGEKLKEVFLMLDNNVVECIKEITESSRNGKLVFFVGAGVSTLSDYPQWWRLVDKYHEELYGSPKKGNYSSDEYLRIPQIFYNVKGEMAFDGILKDFFQVDKPTNPIHDKILAMNPAHVITTNYDNLIDTACWKRGKYFSVISAEEDVANATSSRYLLKVAGDFRKGFKGENVVLKEDDYLNYDQNYPLISNLMKTIIATHTIVFIGYGLGDYNINMLLNWVRKLQKDSFHKPFFIRTDPSPIENETLIYYENKGLRIIDAASLIDSNEYDYLERYSAVMDLLIESQENKFITKDDEVIDYIYGKISPLFALQYIRKIDLKHVFEYDYHFEVNGTVVRHKNKGFGYMERFFELKESCDERSKLSKKQYERFNALFNFFEKNGVICMAKDAGTLNTSIEINSLAYHGKYDVMKKFIEEQSVSIEDDYKKAFFLACLGRWEESYDLYSNIILNSIDESNGCVYYLSQINRYRIYQSITQAVTQFNGLGLLTFGRHYKPFTDEFLARIEREMTNFNIDDLFNGMPFEFQKKYKILEFLSDNQFLYDDTVKLFELTNKVRSEMSEGSYSFGMSSDIVVLLRLYDNLRFLYENCLWSVSFHEFHQYIRNSMSLLIEKAEYERTRDIDELGFSFFGKKSGFFMEYYDFVNISRHFKIDDIKNLERSCSIDKIRFGEQEKIEEYLVGIAEEITKQFSANGMNVVFYTQFISEAKAALYFAKYVKLSEEGLGKIVKALLFYFPERDLDIGKRYVWLERLTKCNELPKSIISIIDDFLVLQAEKHIDQNYSEVSSNGLYSRDYGALIKHFEKNFISKRLSEITLCLTQDKQKQIDFLFKLLPLLSTNAKSHLLSFKSVENINDLMNGIRIGLIDEFTPEHEELIIEYLETRKVNYIVEKEKGIQTFSSNDYMSTFGIWYFLEEINNSKMEEFIGMDDQYDFFVDPENFDYKKFIPSWLKNYNDKLLGKIAGNKHMKHHVIEVLKERVKNSNDKRYLEILMNYFI
TUBE B 264 Bacillus Subtilis Subsp. Natto (Strain Best195) , Siphoviridae Sp. Ct0106 MKTVIQDTADVYFKRKSDGKLVFTAEAQTASFSQAISEEKLRGGIGNKPLYILKSEKEINLTVKNAFFDLEWLAMTQGETIQEETKVKVFDREHGLIVDDTNKVTLKGKPVSDVTFYNKKGLTYKIAVSTDGTYTIPTAFAAAKDKLTAVYQIEKVGRRLAIKASKFSERYEVEYRTIAYNPDTEEVYSDIYIQFPNVSPSGEFEMSLENGNALAPEIKFEALADTDTDEMAVVIEASRDENTAAPVEDTTGSTQSSDLGGTTE
TUBE C 264 Bacillus Subtilis Subsp. Natto (Strain Best195) , Siphoviridae Sp. Ct0106 MKTVIQDTADVYFKRKSDGKLVFTAEAQTASFSQAISEEKLRGGIGNKPLYILKSEKEINLTVKNAFFDLEWLAMTQGETIQEETKVKVFDREHGLIVDDTNKVTLKGKPVSDVTFYNKKGLTYKIAVSTDGTYTIPTAFAAAKDKLTAVYQIEKVGRRLAIKASKFSERYEVEYRTIAYNPDTEEVYSDIYIQFPNVSPSGEFEMSLENGNALAPEIKFEALADTDTDEMAVVIEASRDENTAAPVEDTTGSTQSSDLGGTTE
TUBE E 264 Bacillus Subtilis Subsp. Natto (Strain Best195) , Siphoviridae Sp. Ct0106 MKTVIQDTADVYFKRKSDGKLVFTAEAQTASFSQAISEEKLRGGIGNKPLYILKSEKEINLTVKNAFFDLEWLAMTQGETIQEETKVKVFDREHGLIVDDTNKVTLKGKPVSDVTFYNKKGLTYKIAVSTDGTYTIPTAFAAAKDKLTAVYQIEKVGRRLAIKASKFSERYEVEYRTIAYNPDTEEVYSDIYIQFPNVSPSGEFEMSLENGNALAPEIKFEALADTDTDEMAVVIEASRDENTAAPVEDTTGSTQSSDLGGTTE
TUBE G 264 Bacillus Subtilis Subsp. Natto (Strain Best195) , Siphoviridae Sp. Ct0106 MKTVIQDTADVYFKRKSDGKLVFTAEAQTASFSQAISEEKLRGGIGNKPLYILKSEKEINLTVKNAFFDLEWLAMTQGETIQEETKVKVFDREHGLIVDDTNKVTLKGKPVSDVTFYNKKGLTYKIAVSTDGTYTIPTAFAAAKDKLTAVYQIEKVGRRLAIKASKFSERYEVEYRTIAYNPDTEEVYSDIYIQFPNVSPSGEFEMSLENGNALAPEIKFEALADTDTDEMAVVIEASRDENTAAPVEDTTGSTQSSDLGGTTE
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-09-28
Deposition Author(s): Gao, A. , Huang, J. , Zhu, K.