PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8WFM

Crystal structure of omicron ba.1 in complex with a neutralizing antibody scfv t11

PDB DOI: 10.2210/pdb8wfm/pdb

Classification: VIRAL PROTEIN
Organism(s): Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2023-09-19
Deposition Author(s): Gabibov, A. , Guo, Y. , Mokrushina, Y.A. , Terekhov, S.S. , Zhang, M. , Zhang, N.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.99 Å

8wfm
Literature

Crystal structure of omicron ba.1 in complex with a neutralizing antibody scfv t11

Gabibov, A. , Guo, Y. , Mokrushina, Y.A. , Terekhov, S.S. , Zhang, M. , Zhang, N.

Primary Citation of Related Structures: 8WFM


Proteins
Molecule Chains Sequence Length Organism Sequence
T11 scFv A 255 Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVESGAEVKKPGSSVKVSCKAPGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTPNYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCARGYCGGDCYSLELVWYFDLWGRGTLVTVSSGGGGSGGGGSGGGGSQVVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVQWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSLSGWVFGGGTKLTVLAA
T11 scFv C 255 Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVESGAEVKKPGSSVKVSCKAPGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTPNYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCARGYCGGDCYSLELVWYFDLWGRGTLVTVSSGGGGSGGGGSGGGGSQVVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVQWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSLSGWVFGGGTKLTVLAA
T11 scFv E 255 Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVESGAEVKKPGSSVKVSCKAPGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTPNYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCARGYCGGDCYSLELVWYFDLWGRGTLVTVSSGGGGSGGGGSGGGGSQVVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVQWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSLSGWVFGGGTKLTVLAA
T11 scFv G 255 Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVESGAEVKKPGSSVKVSCKAPGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTPNYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCARGYCGGDCYSLELVWYFDLWGRGTLVTVSSGGGGSGGGGSGGGGSQVVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVQWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSLSGWVFGGGTKLTVLAA
Spike protein S1 B 223 Severe Acute Respiratory Syndrome Coronavirus 2 RVQPTESIVRFPNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNF
Spike protein S1 D 223 Severe Acute Respiratory Syndrome Coronavirus 2 RVQPTESIVRFPNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNF
Spike protein S1 F 223 Severe Acute Respiratory Syndrome Coronavirus 2 RVQPTESIVRFPNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNF
Spike protein S1 H 223 Severe Acute Respiratory Syndrome Coronavirus 2 RVQPTESIVRFPNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNF
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2023-09-19
Deposition Author(s): Gabibov, A. , Guo, Y. , Mokrushina, Y.A. , Terekhov, S.S. , Zhang, M. , Zhang, N.