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8WDV
Photosynthetic lh1-rc complex from the purple sulfur bacterium allochromatium vinosum purified by ca2+-deae
PDB DOI: 10.2210/pdb8wdv/pdb
Classification: PHOTOSYNTHESIS Organism(s): Allochromatium Vinosum Dsm 180
Deposited: 2023-09-16 Deposition Author(s): Hall, M. , Harada, A. , Humbel, B.M. , Iwasaki, K. , Ji, X.-C. , Kanno, R. , Kimura, Y. , Kobayashi, A. , Madigan, M.T. , Minamino, A. , Mizoguchi, A. , Nakamura, N. , Purba, E.R. , Tani, K. , Wang-Otomo, Z.-Y. , Yu, L.-J.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.24 Å
Photosynthetic lh1-rc complex from the purple sulfur bacterium allochromatium vinosum purified by ca2+-deae
Hall, M. , Harada, A. , Humbel, B.M. , Iwasaki, K. , Ji, X.-C. , Kanno, R. , Kimura, Y. , Kobayashi, A. , Madigan, M.T. , Minamino, A. , Mizoguchi, A. , Nakamura, N. , Purba, E.R. , Tani, K. , Wang-Otomo, Z.-Y. , Yu, L.-J.
Primary Citation of Related Structures: 8WDV
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Photosynthetic reaction center cytochrome c subunit | C | 383 | Allochromatium Vinosum Dsm 180 | MNLGKQLTLPAVAVVASVVLLGCERPPPEVVQKGYRGVAMEQNYNPRLLEASIKANLPVESLPAAAPGGPSVSDVYENVQVLKDLSVAEFTRTMVAVTTWVAPKEGCNYCHVPGNWASDDIYTKVVSRRMFELVRATNSNWKDHVAETGVTCYTCHRGNPVPKYVWVTDPGPNQPSGVTPTGQNYASSTVAYSALPLDPYTPFLDQSNEIRVIGQTALPAGNTTSLKQAEWTYGLMMQISDSLGVNCTFCHNSRSFYDWKQSTPQRTTAWYAIRHVRDINQNYIWPLNDALPASRKGPYGDPFKVGCMTCHQGAYKPLYGAQMAKDYPALYESAPAEAAPATEEAPAAEAEAVEAAPVEEAAPAPVEQAAAPVEDAAPAPQQL |
| Reaction center protein L chain | L | 278 | Allochromatium Vinosum Dsm 180 | MAMLSFERKYRVRGGTLIGGDLFDFWVGPFYVGFFGVAGFFFALLGVLLIVWGATIGPNAELQTYNIWQISIAPPDLSYGLGMAPMTEGGLWQIITICAIGAFVSWALREVEICRKLGIGFHIPFAFAFAIGAYLVLVVVRPILMGAWGHGFPYGILSHLDWVSNVGYQFLHFHYNPAHMLAITFFFTNCLALSMHGSLILSVTNPQKGEEVKTSEHENTFFRDIVGYSIGALAIHRLGLFLALSAVFWSAVCIVISGPFWTRGWPEWWNWWLELPLW |
| Reaction center protein M chain | M | 325 | Allochromatium Vinosum Dsm 180 | MPEYQNIFTTVQVRAPAYPGVPLPKGSLPRIGKPIFSYWAGKIGDAQIGPIYLGFTGTLSIIFGFMAIFIIGFNMLASVDWNIIQFVKHFFWLGLEPPAPQYGLTIPPLSEGGWWLMAGFFLTMSILLWWVRTYKRAEALGMSQHLSWAFAAAIFFYLSLGFIRPVMMGSWAEAVPFGIFPHLDWTAAFSIRYGNLYYNPFHMLSIAFLYGSALLFAMHGATILAVSRFGGDREIDQITDRGTAAERAAIFWRWTMGFNASMESIHRWAWWCAVLTVITAGIGILLTGTVVENWYLWAIKHGVAPAYPEVVTAVDPYATATGVTQ |
| Photosynthetic reaction center H subunit | H | 259 | Allochromatium Vinosum Dsm 180 | MSAAITEYMDVAQLTIWAFWFFFAGLIIYLRREDKREGYPLDSDRTERSGGRVKVVGFPDLAEPKTFVLPHNAGTVMAPRVEAPTSINATPVAPFPGAPFEPNGDPMLSGFGPSASPDRAKHCDLTFEGLPKIVPLRVATDFSIAERDPDPRGMTVVGLDGEVAGTVSDVWVDRSEPQIRYLEVKVAAGGKNVLLPIGFSRFDKKARKVKVAAIKAAHFANVPTLAKPDQITLYEEDKVCAYYAGGKLYATAERAGPLL |
| Antenna complex alpha/beta subunit | A | 44 | Allochromatium Vinosum Dsm 180 | MHKIWQIFDPRRTLVALFGFLFVLGLLIHFILLSSPAFNWLSGS |
| Antenna complex alpha/beta subunit | I | 44 | Allochromatium Vinosum Dsm 180 | MHKIWQIFDPRRTLVALFGFLFVLGLLIHFILLSSPAFNWLSGS |
| Antenna complex alpha/beta subunit | K | 44 | Allochromatium Vinosum Dsm 180 | MHKIWQIFDPRRTLVALFGFLFVLGLLIHFILLSSPAFNWLSGS |
| Antenna complex alpha/beta subunit | O | 44 | Allochromatium Vinosum Dsm 180 | MHKIWQIFDPRRTLVALFGFLFVLGLLIHFILLSSPAFNWLSGS |
| Antenna complex alpha/beta subunit | Q | 44 | Allochromatium Vinosum Dsm 180 | MHKIWQIFDPRRTLVALFGFLFVLGLLIHFILLSSPAFNWLSGS |
| Antenna complex alpha/beta subunit | 1 | 44 | Allochromatium Vinosum Dsm 180 | MHKIWQIFDPRRTLVALFGFLFVLGLLIHFILLSSPAFNWLSGS |
| Antenna complex alpha/beta subunit | 5 | 44 | Allochromatium Vinosum Dsm 180 | MHKIWQIFDPRRTLVALFGFLFVLGLLIHFILLSSPAFNWLSGS |
| Antenna complex alpha/beta subunit | 7 | 44 | Allochromatium Vinosum Dsm 180 | MHKIWQIFDPRRTLVALFGFLFVLGLLIHFILLSSPAFNWLSGS |
| Antenna complex alpha/beta subunit | 9 | 44 | Allochromatium Vinosum Dsm 180 | MHKIWQIFDPRRTLVALFGFLFVLGLLIHFILLSSPAFNWLSGS |
| Antenna complex alpha/beta subunit | B | 46 | Allochromatium Vinosum Dsm 180 | MANSSMTGLTEQEAQEFHGIFVQSMTAFFGIVVIAHILAWLWRPWL |
| Antenna complex alpha/beta subunit | J | 46 | Allochromatium Vinosum Dsm 180 | MANSSMTGLTEQEAQEFHGIFVQSMTAFFGIVVIAHILAWLWRPWL |
| Antenna complex alpha/beta subunit | N | 46 | Allochromatium Vinosum Dsm 180 | MANSSMTGLTEQEAQEFHGIFVQSMTAFFGIVVIAHILAWLWRPWL |
| Antenna complex alpha/beta subunit | P | 46 | Allochromatium Vinosum Dsm 180 | MANSSMTGLTEQEAQEFHGIFVQSMTAFFGIVVIAHILAWLWRPWL |
| Antenna complex alpha/beta subunit | R | 46 | Allochromatium Vinosum Dsm 180 | MANSSMTGLTEQEAQEFHGIFVQSMTAFFGIVVIAHILAWLWRPWL |
| Antenna complex alpha/beta subunit | 2 | 46 | Allochromatium Vinosum Dsm 180 | MANSSMTGLTEQEAQEFHGIFVQSMTAFFGIVVIAHILAWLWRPWL |
| Antenna complex alpha/beta subunit | 4 | 46 | Allochromatium Vinosum Dsm 180 | MANSSMTGLTEQEAQEFHGIFVQSMTAFFGIVVIAHILAWLWRPWL |
| Antenna complex alpha/beta subunit | 6 | 46 | Allochromatium Vinosum Dsm 180 | MANSSMTGLTEQEAQEFHGIFVQSMTAFFGIVVIAHILAWLWRPWL |
| Antenna complex alpha/beta subunit | 8 | 46 | Allochromatium Vinosum Dsm 180 | MANSSMTGLTEQEAQEFHGIFVQSMTAFFGIVVIAHILAWLWRPWL |
| Antenna complex alpha/beta subunit | 0 | 46 | Allochromatium Vinosum Dsm 180 | MANSSMTGLTEQEAQEFHGIFVQSMTAFFGIVVIAHILAWLWRPWL |
| Antenna complex alpha/beta subunit | D | 64 | Allochromatium Vinosum Dsm 180 | MSPDLWKIWLLVDPRRILIAVFAFLTVLGLAIHMILLSTAEFNWLEDGVPAATVQQVTPVVPQR |
| Antenna complex alpha/beta subunit | F | 64 | Allochromatium Vinosum Dsm 180 | MSPDLWKIWLLVDPRRILIAVFAFLTVLGLAIHMILLSTAEFNWLEDGVPAATVQQVTPVVPQR |
| Antenna complex alpha/beta subunit | S | 64 | Allochromatium Vinosum Dsm 180 | MSPDLWKIWLLVDPRRILIAVFAFLTVLGLAIHMILLSTAEFNWLEDGVPAATVQQVTPVVPQR |
| Antenna complex alpha/beta subunit | U | 64 | Allochromatium Vinosum Dsm 180 | MSPDLWKIWLLVDPRRILIAVFAFLTVLGLAIHMILLSTAEFNWLEDGVPAATVQQVTPVVPQR |
| Antenna complex alpha/beta subunit | W | 64 | Allochromatium Vinosum Dsm 180 | MSPDLWKIWLLVDPRRILIAVFAFLTVLGLAIHMILLSTAEFNWLEDGVPAATVQQVTPVVPQR |
| Antenna complex alpha/beta subunit | Y | 64 | Allochromatium Vinosum Dsm 180 | MSPDLWKIWLLVDPRRILIAVFAFLTVLGLAIHMILLSTAEFNWLEDGVPAATVQQVTPVVPQR |
| Antenna complex alpha/beta subunit | E | 47 | Allochromatium Vinosum Dsm 180 | MADQKSMTGLTEEEAKEFHGIFTQSMTMFFGIVIIAHILAWLWRPWL |
| Antenna complex alpha/beta subunit | G | 47 | Allochromatium Vinosum Dsm 180 | MADQKSMTGLTEEEAKEFHGIFTQSMTMFFGIVIIAHILAWLWRPWL |
| Antenna complex alpha/beta subunit | T | 47 | Allochromatium Vinosum Dsm 180 | MADQKSMTGLTEEEAKEFHGIFTQSMTMFFGIVIIAHILAWLWRPWL |
| Antenna complex alpha/beta subunit | V | 47 | Allochromatium Vinosum Dsm 180 | MADQKSMTGLTEEEAKEFHGIFTQSMTMFFGIVIIAHILAWLWRPWL |
| Antenna complex alpha/beta subunit | X | 47 | Allochromatium Vinosum Dsm 180 | MADQKSMTGLTEEEAKEFHGIFTQSMTMFFGIVIIAHILAWLWRPWL |
| Antenna complex alpha/beta subunit | Z | 47 | Allochromatium Vinosum Dsm 180 | MADQKSMTGLTEEEAKEFHGIFTQSMTMFFGIVIIAHILAWLWRPWL |
| Antenna complex alpha/beta subunit | 3 | 66 | Allochromatium Vinosum Dsm 180 | MMPQLYKIWLAFDPRMALIGLGAFLFALALFIHYMLLRSPEFDWLLGPDYAPVTLSAGMSALPAGR |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-09-16 Deposition Author(s): Hall, M. , Harada, A. , Humbel, B.M. , Iwasaki, K. , Ji, X.-C. , Kanno, R. , Kimura, Y. , Kobayashi, A. , Madigan, M.T. , Minamino, A. , Mizoguchi, A. , Nakamura, N. , Purba, E.R. , Tani, K. , Wang-Otomo, Z.-Y. , Yu, L.-J.