8WB4
Structure of psii-acpii supercomplex from cryptophyte algae
PDB DOI: 10.2210/pdb8wb4/pdb
Classification: PHOTOSYNTHESIS Organism(s): Chroomonas Placoidea
Deposited: 2023-09-08 Deposition Author(s): Han, G.Y. , Li, X.Y. , Mao, Z.Y. , Shen, J.R.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.47 Å
Structure of psii-acpii supercomplex from cryptophyte algae
Han, G.Y. , Li, X.Y. , Mao, Z.Y. , Shen, J.R.
Primary Citation of Related Structures: 8WB4
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Photosystem II reaction center M | M | 115 | Chroomonas Placoidea | MQRLALLVAATIASAAAFAPTPALTGLRQQAPLCSGNKLSAACRAPRAAKPAMTMSLAETTNQAMLLAEGGMNVSVAAYLAVLLGTFIPVVFLLTLYIQSESRKAAETGSEGDKF |
| Cytochrome b559 subunit alpha | E | 84 | Chroomonas Placoidea | MSGGSTGERPFSDIITSIRYWIIHSITIPALYVAGWLFVSTGLAYDIFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDLTKGL |
| Cytochrome b559 subunit beta | F | 42 | Chroomonas Placoidea | MSKIQQPVSYPIFTFRWLAIHGLAVPTVFFLGAITSMQFIQR |
| Photosystem II reaction center protein H | H | 67 | Chroomonas Placoidea | MALRTRLGELLRPLNSEYGKVAPGWGTTPIMGFVMLLFFLFLLIILQIYNSSLIIENVDVDWASLGS |
| Photosystem II reaction center protein I | I | 38 | Chroomonas Placoidea | MFTLKIVVYTTVTFFVSLFTFGFLSNDASRNPNRKDLE |
| Photosystem II reaction center protein J | J | 39 | Chroomonas Placoidea | MASTGRIPLWLIATVGGTLALTVVGIFFYGSYSGVGSSL |
| Photosystem II reaction center protein K | K | 45 | Chroomonas Placoidea | MEAILLIAKLPEAYAVFKPIIDVAPVIPVFFLLLAFVWQAAVGFR |
| Photosystem II reaction center protein O | O | 330 | Chroomonas Placoidea | LAMARLAILLGLVASAAAFTGPAVLPLKASNRAAACSVTMQDNSLAKKAAGIAAIPLSFLLGVNAANAITTEDIRGLTYSQVKGTGLANRCPEVSEQNAGGTIKFADDKKYKVTELCLEPKSFQIEEEVTKRRGETKKEFVDTKLMTRATYSLTGIEGPIVFKDGGLTFLEKGGIDYAATTVQLPGGERVPFLFTIKELEGKFSSSQVSAGTELGGNFKTPSYRTGLFLDPKGRGGTTGYDMAVALPGLEADGGEGQDELFAETNKVFQVTDGSIEMAFNRVDGTNGEFSGVFVSEQLSDTDMGSKAPKKVLLKGIVFGKIEEQTGDEDY |
| Photosystem II reaction center protein Q | Q | 21 | Chroomonas Placoidea | XXXXXXXXXXXXXXXXXXXXX |
| Photosystem II reaction center protein R | R | 26 | Chroomonas Placoidea | XXXXXXXXXXXXXXXXXXXXXXXXXX |
| CCPII-S | S | 285 | Chroomonas Placoidea | DHKRSRMMKSLALAAVGLAVGAEAFAPTPMVGGAKLALRTSSTRSVATVGPKMAMDVNAIVEGAQYLTAAVPNVPFVDEITGEPQGLTAPIVHFGSVISLWLLFALPVWSAAYKAAGADTAEWVGVSQVTEDAPGIGLYGKYAPEYDGPTFREGLEYVLSFAWKPPILIAWKPRADLDRAMMDPARDTVVSSLYKSLGGALDKTAVYDEEDQLLILSDMETFPETELGRRRVAQAEAAGWFTGNPSFGKSLIEYSEETKKGMREPGTVSISAKELAALRAEAAKK |
| ACPII-1 | 1 | 235 | Chroomonas Placoidea | KMLRLSILAACLAAAQAFTSPAALLRPSTRAAVSRGPSMQLYKDGIIQGLGVEAIPGAGRPANLDGTLVGDVGFDPLGFSNWLDLRWAREAEIKHGRVAMLAATGMIVQDAYKFPGFEGEFGGAAMMKLHNLAVEQGAMQQLLLWLGLLEIISGVPAIIQTLNGSERQPGDFGFDPLNCGANPDTLARRQLTELKNGRLAMIAVGGMVHHYLLVGRGPIEFITNIPNFKNPLPPF |
| ACPII-1 | 7 | 235 | Chroomonas Placoidea | KMLRLSILAACLAAAQAFTSPAALLRPSTRAAVSRGPSMQLYKDGIIQGLGVEAIPGAGRPANLDGTLVGDVGFDPLGFSNWLDLRWAREAEIKHGRVAMLAATGMIVQDAYKFPGFEGEFGGAAMMKLHNLAVEQGAMQQLLLWLGLLEIISGVPAIIQTLNGSERQPGDFGFDPLNCGANPDTLARRQLTELKNGRLAMIAVGGMVHHYLLVGRGPIEFITNIPNFKNPLPPF |
| Photosystem II reaction center protein T | T | 32 | Chroomonas Placoidea | METLVYVFLLAGTLGVIFFAVFFRDPPRIAKK |
| Photosystem II reaction center protein U | U | 150 | Chroomonas Placoidea | LIAALAVSASAFSPAVPALRTAPQACGITMQAESVDRRGFLGALGAAVVAAPLAASANVEYPNVPYLGGSDIIDVNNANVRVYTRLPGMYPAIAKKIIKRAPYKDINEMLEKGDFTAAEKDILDKYLPNLTALEPAPEYVIDNINNGLYR |
| Photosystem II cytochrome c550 | V | 163 | Chroomonas Placoidea | MLKRFSSLNIILGMLLVSFVASPVHATDLDENTRTVPLDSSGTTVILTPEQVKRGKRLFNSSCGNCHVGGITKTNPNLGLEPDALSLATPARDNIDALVDYMKNPTTYDGLESIAELHPSVKSADIFPKMRSLSDEDLFAIGGHILLQPKLSSEKWGGGKIYY |
| Photosystem II reaction center X protein | X | 39 | Chroomonas Placoidea | MTPSLSAFINSLLLGLFVVVIPIGAALFLVSQSDRVTRT |
| Photosystem II reaction center protein Ycf12 | Y | 34 | Chroomonas Placoidea | MFNPTTLFQLIALFLVITSGPAIIVLIAFRRGNL |
| Photosystem II reaction center protein Z | Z | 62 | Chroomonas Placoidea | MVGLLQILVSILILLSFALVVGVPVILVSPGEWEKSKGLVYSAAGLWFGLVIVIAAFNSFVI |
| Photosystem II CP47 reaction center protein | B | 509 | Chroomonas Placoidea | MGLPWYRVHTVVLNDPGRLIAVHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMARIGVTDSWGGWSVTGESVANPGFWSFEGVALAHIGLSGLLFLAAVWHWVYWDLELFRDPRTGNPALDLPKIFGIHLLLSGVLCFGFGAFHVTGAWGPGIWVSDAYGITGKVQPVAPAWGAEGFNPFNPSGVASHHIAAGILGFLAGIFHIAVRPPQRLYRALRMGNIETVLSSSIAAVFWSAFITTGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVENSLNEGLNLSEAWSRIPDKLAFYDYIGNNPAKGGLFRAGPMNKGDGIAEAWLGHPIFQDKEGKELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVSFYGGKLNGQVFKDAPTVKKYARKAQLGEVLEFDRTTLESDGVFRSSPRGWYTFGHANFALLFFLGHLWHGSRTLFRDVFSGIGAEVTEQVEFGAFQKLGDRSTKKQGAV |
| Photosystem II CP43 reaction center protein | C | 461 | Chroomonas Placoidea | METPFNSSLSVAGRDIESTGFAWWSGNSRLINVSGKLLGAHVAHAGLMVFWCGAMTLFEVAHYIPEKPLYEQGLILLPHLAVLGWGVGPGGEIIDIYPYFVVGVLHLISSAVLGFGGVYHSLIGPDTLEESFPAFGYDWRDKNKITTILGIHLIVLGIGAFLLVIKAMYVGGIYDTWAPGGGDVRIIDSPTLNPGVIFGYVLKSPWGGDGWIVSVNNMEDLVGGHIWIGIICIVGGFWHIFTKPFAWARRAYVWSGEAYLSYSLVAVSLMGFIASQYSWYNNTAYPSEFYGPTGPEASQSQAFTFLVRDQRLGANVSSAQGPTGLGKYLMRSPSGEIILGGETQRFWDLRAPWIEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNYVSPRSWLTCAHFFLGFAFYIGHLWHAGRARAAAAGFEKGINRENEPTLSLRPID |
| Photosystem II reaction center protein G | G | 64 | Chroomonas Placoidea | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| Photosystem II reaction center protein L | L | 38 | Chroomonas Placoidea | MSGPNPNKQPVELNRTSLFWGLLLIFVLAVLFSSYFFN |
| ACPII-2 | 2 | 217 | Chroomonas Placoidea | AMLRVALIAAILASASAFAPMGSLGLVKSARSGAAISPRMQSGDFSAAVPFLKRPSNLDGTLAGDVGFDPLGFSDVFDLRVLREAELKHGRFAMLAVLGFLVQEVYTFPFFPKMAPVDAHDYFVTQGGGSQIIFWISFVEIFGVVALFELIQGKRDAGDFAFDPLGLGKDEATLARYKVAEIKHARLAMIAIGGFIHQFWVTKQTVLEQLGNFQSLA |
| ACPII-2 | 8 | 217 | Chroomonas Placoidea | AMLRVALIAAILASASAFAPMGSLGLVKSARSGAAISPRMQSGDFSAAVPFLKRPSNLDGTLAGDVGFDPLGFSDVFDLRVLREAELKHGRFAMLAVLGFLVQEVYTFPFFPKMAPVDAHDYFVTQGGGSQIIFWISFVEIFGVVALFELIQGKRDAGDFAFDPLGLGKDEATLARYKVAEIKHARLAMIAIGGFIHQFWVTKQTVLEQLGNFQSLA |
| Photosystem II reaction center protein W | W | 114 | Chroomonas Placoidea | SKVLFLALCLVAGASAFNAPAPMALRASKTAMTMKAEGPMPKLAKALAPAIAAANIAIASPVFAEGTGEALGIDDTRLIVPVILIPVITFILYAGFASEQDNEDFFDTYDQRRK |
| ACPII-3 | 3 | 222 | Chroomonas Placoidea | ITHSRMLRTAILALCVAGASAFTASPALYKSASRKAAVSGMKMQDRSYAMPFLSRPPALDGSMAGDVGFDPLGFSNYFDLKWLREAELKHGRVCMLGCLGFLVQEQANLPLPGFDNKLATEAFFSVPAGGLWQIFFSLGAIEIITNKGKLTPGSMFTGGRAPGDLDFDPLNLSVDETALRRFELAELKHARLAMIGLGGMLHQMLLTKQAPIEQLTNFKSLA |
| ACPII-3 | 9 | 222 | Chroomonas Placoidea | ITHSRMLRTAILALCVAGASAFTASPALYKSASRKAAVSGMKMQDRSYAMPFLSRPPALDGSMAGDVGFDPLGFSNYFDLKWLREAELKHGRVCMLGCLGFLVQEQANLPLPGFDNKLATEAFFSVPAGGLWQIFFSLGAIEIITNKGKLTPGSMFTGGRAPGDLDFDPLNLSVDETALRRFELAELKHARLAMIGLGGMLHQMLLTKQAPIEQLTNFKSLA |
| ACPII-4 | 4 | 226 | Chroomonas Placoidea | AVVLAACVASAAAFAPGASVLPRAAARATSTKGPSMQLLPLYGEGKLQGPGTQAIPGSEPPPALDGTWVGDVGFDPLGFSRVIDMRWLREAELKHGRVCMLAATGMIVQDIALFPGVTKTFGPAKITALHDVAVKQGSMQQLLVWLGFLEIFGFVAIVQMLQGSGRQPGDFGFDPLNCGANTDTLARRQLVELKNGRLAMIATGGMIHHFFLTGKGPIEFITTLGA |
| ACPII-4 | 0 | 226 | Chroomonas Placoidea | AVVLAACVASAAAFAPGASVLPRAAARATSTKGPSMQLLPLYGEGKLQGPGTQAIPGSEPPPALDGTWVGDVGFDPLGFSRVIDMRWLREAELKHGRVCMLAATGMIVQDIALFPGVTKTFGPAKITALHDVAVKQGSMQQLLVWLGFLEIFGFVAIVQMLQGSGRQPGDFGFDPLNCGANTDTLARRQLVELKNGRLAMIATGGMIHHFFLTGKGPIEFITTLGA |
| ACPII-5 | 5 | 218 | Chroomonas Placoidea | ACASAAAFAPGAMPSIGKAPRAVSKTAPRMAVFPGQFSDSVPFLKQPTNLDGSYVGDVGFDPLGFSDVFDIRVLREAELKHGRIAMLATLGMVVQEAYTFPFFDKVLPIPAHDVIVKSGGMSQILLWTSFAEIFGGIALFQTIQGKRAPGDYSFDPLNLSANDLEKRERYALAEIKHSRLAMLAFSGMVHQYFITNQGVIEQINNFRPINGFPDATFS |
| ACPII-6 | P | 220 | Chroomonas Placoidea | PAMFRAALLLACLASASAFAPGSLMMPKSATRAAISRGPRMQANDDLAVPFLERPPMLDGSYAGDIGFDPVGFSNYFDLRWLREAELKHGRVCMLGVVGFLVQEFVTLPMFSNGVTPVDDFFVVPATGLWQIFFTIGFVEAFSNGFKLTPSDMFADDRAPGDLGFDPLGCGKDPAALARRQLVEVKNGRLAMIAFGGMLHQQLLTKQGVIEQLTNFKAIM |
| ACPII-6 | 6 | 220 | Chroomonas Placoidea | PAMFRAALLLACLASASAFAPGSLMMPKSATRAAISRGPRMQANDDLAVPFLERPPMLDGSYAGDIGFDPVGFSNYFDLRWLREAELKHGRVCMLGVVGFLVQEFVTLPMFSNGVTPVDDFFVVPATGLWQIFFTIGFVEAFSNGFKLTPSDMFADDRAPGDLGFDPLGCGKDPAALARRQLVEVKNGRLAMIAFGGMLHQQLLTKQGVIEQLTNFKAIM |
| Photosystem II protein D1 | A | 360 | Chroomonas Placoidea | MTATLERRESASAWERFCSWITSTDNRLYIGWFGVLMIPTLLTATTVYIIAFVAAPPVDIDGIREPVAGSLLYGNNIITGAVIPSSASIGIHFYPIWEAASLDEWLYNGGPYQLIVDHFLLGVCGWIGREWEFSYRLGMRPWISVAFTAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHQLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLGLWPVVGIWFTALGVMTMAFNLNGFNFNQSVVDSQGRVINTWADILNRANLGMEVMHERNAHNFPLDLAAGESLPVALTAPAVNG |
| Photosystem II D2 protein | D | 351 | Chroomonas Placoidea | MTIAIGQEEGRGWFDLIDDWLKRDRFVFVGWSGLLLFPTSYLSIGGWFTGTTFVTSWYTHGLASSYLEGCNFFTAAVSTPANSMGHSLLLLWGPEAQGDFTRWCQIGGLWAFCALHGSFALIGFCLRQFEIARLVGIRPYNAIAFSGPIAIFVSVFLMYPLGQASWFFAPSLGVAAIFRFLLFIQGFHNFTLNPFHMMGVAGILGAALLCAIHGATVQNTIFEDGDAANTFRAFTPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPLAGLWTSAIGIVGLALNLRAYDFVSQELRAAEDPEFETFYTKNILLNEGIRSWMAAQDQPHENFIFPEEVLPRGNAL |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-09-08 Deposition Author(s): Han, G.Y. , Li, X.Y. , Mao, Z.Y. , Shen, J.R.