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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8WA1

The cryo-em structure of the nicotiana tabacum pep-pap-tec2

PDB DOI: 10.2210/pdb8wa1/pdb

Classification: TRANSCRIPTION
Organism(s): Nicotiana Tabacum , Synthetic Construct

Deposited: 2023-09-06
Deposition Author(s): Wu, X.X. , Zhang, Y.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.8 Å

8wa1
Literature

The cryo-em structure of the nicotiana tabacum pep-pap-tec2

Wu, X.X. , Zhang, Y.

Primary Citation of Related Structures: 8WA1


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA-directed RNA polymerase subunit alpha A 337 Nicotiana Tabacum , Synthetic Construct MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRVKSEKVPHEYSTITGIQESVHEILMNLKEIILRSNLYGTSDASICVKGPGSVTAQDIILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQDNQHTVPLSPFTFHDKLAKLIKNKKKIALKSIFIDQSELPSRIYNCLKMSNIYTLLDLLNNSQEDLMKIEHFRSEDVKRILGILEKYFVIDLAKNKF
Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14-like isoform X2 J 507 Nicotiana Tabacum , Synthetic Construct MVSSTILIQQPTNLFHQPEFQHQLWRQGCAAPLQKQPIIICSSNKGRSRPLRVTASANGAATSSTLEGYDSSPTPSAFPLFTPPSQPHDTPASQLELADPDFYKIGYVRSFRAYGIEFREGPDGYGVFASRDVEPLRRARVIMEIPLELMLTISKKLPWMFFPDIIPVGHPIFDIINSTNPETDSDLRLACLLLYAFDCKDNFWQLYGDFLPSDDECTSFLLATEEDLLELQDEKLASTMREQQQRALEFWEKNWHSAVPLKIKRLARDPERFIWAMCIAQSRSINLQMRIGALVQDANLLVPYADMMNHSFQPNCFFHWRFKDRMLEVMINAGQRIRKGDEMTVDYMAGQKNNFFMQRYGFSSPVNPWDVIHFTGDAKIHLDTFLSVFNISGLPGEYYHNSRLSNDGDSFVDGAIIAAARTLPTWSDGDLPPIPSLERKAVKELQEECHQMLAEFPTTSDEDQKILDSMPDCRRTLEAAIKYRLHRKLLIEKVIQALDIYQDRILF
PAP8(pTAC6) K 331 Nicotiana Tabacum , Synthetic Construct MSAAQLFFPLPPNLSTFFTTPSSQALLTISFVKPISNNPNSVKQSFTTKRRRDFRVFADDEDADGGGPDDYDMDEDEVEEADNKKDFDVDYDTLLGGASLAVAATGDDIAMVHSSSFVFTQGWNSEKIVDYRINEEEFHKISLLDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPRVLAPMPQKYIRCAMSDYGCYNVTEPPIDAPRDPMYKSEREVSKVFLTKHYRNRRAGDPEFALDFEEIYVIDSKTKSITRAKVVVTVPGGRNRDRKNDLLVIRDNGNSFKIIPSEERDDPTTVIEKEEWKKSRQDMERHLRKLRDFSVSNWF
superoxide dismutase L 303 Nicotiana Tabacum , Synthetic Construct MMAATASTTLTSAFLPFQGFRESCRTLNWRTHKKQFARKAGPVKVTAKFELMPPPYPMNALEPHMSHTTFEYHWGKHHRAYVDNLNKQIDGTELDGMTLEDIILITYNRGDLLPPFNNAAQAWNHQFFWESMKPSGGGKPSGELLQLINRDFGSFEAFVKEFKAAAATQFGSGWAWLAYKANRLNVGNTSNPHPTDEDKKLVVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFRNRRPDYISIFMEKLVSWEAVSSRLEVAKAKAAEREEEEERKKREKEEEYKAGGEVREMYVESTDSDAE
Thioredoxin-like protein CITRX1, chloroplastic M 178 Nicotiana Tabacum , Synthetic Construct MQAATLSFHPLAPPPQTSACHFSSNQRKYSLFSYTCPTPRPSLLSTQTLSRKSICKPPAVATGKYVREDYLVKKVSAKDIQELIKGERNVPLIIDFYATWCGPCILMAQELEMLAVEYESNALIVKVDTDDEYEFARDMQVRGLPTLYFISPDPNKDAIRTEGLIPIQMMRDIINNDL
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase-like N 770 Nicotiana Tabacum , Synthetic Construct MPFTLFSLPPFPSLLHHNPPPLQFKPFTSLHHLRLKYPTTLTTVSAIGADGKYYPNPSDDDPPEAPEDSMHGVNKFQQIQRQAAKAKKQQEELFKKEQSIFVNALADVEDAPDNPALNDNDNSGDDLFGEIDKAIALKRKEFVKQGLLKPNPPKNSTLVESEVENVDELEPEEVVDLEEIDGLSGLAEIEESDEEKSDFEVSDDMGKSEFSDLSSFDIDFDEFGKTKPRIVEPKFRMSLAELLDESRVVPLSVYGDLEVGISGVQHDSRLVESGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNAVLAVLAASFYRHPSKSMTLIGITGTNGKTTTSYLIKAMYEAMGLRTGMLSTVGYYIYGDNKLESPHTTPDAVLVQKLMAKMVHNGTEALVMEASSHGLALGRCDKVDFDIAVFTNLTRDHLDFHGTEEEYRDAKAKLFARMVDPARHRKIVNIDDPNAAFFLAQGNPDVPIVTFAMENKSADVHPLKFQLSLFETQVLVNTPQGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVKGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDYVRELGPRRVITVFGCAGESDRGKRPIMAKIATDKSDVTILTSDNPKTEDPLDILDDMLAGVGWSMQDYLKHGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDIVVVAGKGHETYQIEGDKKEFFDDREECREALQYVDELHQAGIDTSEFPWRLPESH
Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X1 O 167 Nicotiana Tabacum , Synthetic Construct MAASTLTFSGFSTLQTFPKIAAVENTKRVNFSIRSQSASNSKNESRGGRRIWRRRKLTKKDETLDAKMERIPFLEEQVRKIRDGGKLLTMDIHRLLLNEDNRFDFVNEIAAEAKQYVENNRDEYGAKKAILHVLSNRMNDAGVYRAEAYMESDPFKPGPGYMKDELL
PAP13(pTAC18) P 143 Nicotiana Tabacum , Synthetic Construct MASFITMPALSYLSTNTSSLERTNFRPSSRGYQGVRAMRTEKPLEELYNVRVERNVTKDRLMELGVPRWSMWKTGKCKLPWDWHVDQLVYIEEGEVRVVPEGSQRFMQFVAGDLVRYPKWFEADLYFNDFYQERYSFRAYGDS
DNA-directed RNA polymerase subunit beta B 1070 Nicotiana Tabacum , Synthetic Construct MLGDGNEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYRSELDHNGISVYTGTIISDWGGRSELEIDRKARIWARVSRKQKISILVLSSAMGLNLREILENVCYPEIFLSFLSDKERKKIGSKENAILEFYQQFACVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGLKFGMGALDDMNHLKNKRIRSVADLLQDQFGLALVRLENVVRGTICGAIRHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLESPFYEISERSTGVRMLYLSPGRDEYYMVAAGNSLALNQDIQEEQVVPARYRQEFLTIAWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQAALDSGALAIAEREGRVVYTNTDKILLAGNGDILSIPLVIYQRSNKNTCMHQKLQVPRGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSQGPEKVTNEIPHLEAHLLRNLDKNGIVMLGSWVETGDILVGKLTPQVVKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKRGGSSYNPETIRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRSVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPNPEDAPESFRLLVRELRSLALELNHFLVSEKNFQINRKEA
DNA-directed RNA polymerase subunit gamma C 688 Nicotiana Tabacum , Synthetic Construct MNNNFSSMIDRYKHQQLRIGSVSPQQISAWATKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRIIIENSLVEWEELGEEGHTGNEWEDRKVGRRKDFLVRRVELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQVEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNHRGICVNRYNPCNRRNYQNQKRSDNSHYKYTKEPFFSNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASRETPIEVHYESLGTFYEIYGHYLIVRSLKKQILFIYIRTTVGHIALYREIEEAIQGFSRAYSSGT
Fructokinase-like 1, chloroplastic I 486 Nicotiana Tabacum , Synthetic Construct MASIHFLPQSLPHHSHNSLTHFNFSSIFFSSKLPHRKNTLKCSSNDHSTTTQEPPKHSPRGPKKSSRTAKKTSKPQKDSNFETNIEKSNTQMELSKNADDKIEKYDDGVDFPYPNPPLVICFGAAQKEFVPTVRVSHEQMHQDKYSEWKMLQWNPPEFVRAPGGPPSNVAISHVRLGGRAAFMGKVGNDEFGQEMVLLMNKEKVQTRAVKFDDSMRTGCTHMKIKFEDGKMKVEKVKEPAEDSLSSSELNLDVLKEARIFHFNSEVLTSSSMRSTLFKAISLSKKFGGLVFFDLNLPLPLWRSRDETRNLIKEAWEQANIIEVSRQELEFLLDEEHYERKRNYRPQYFAENFEQTKQRRDYYHYTPAEIAPLWHDGLKLLFVTDGTLRLHYYSPSFDGVVVGTEDVLITPFTCDRTGSGDAVVAGIMRKLTTQPEMYHDQDVLERQLRFAIAAGIISQWTIGAVRGFPTESATQNLKEQVYVPSMW
PAP1(pTAC3) D 892 Nicotiana Tabacum , Synthetic Construct MAGISIHYLPFNSKFTLPIPRPSISRSIKASVSSQPRKTRRRKQTQQQQHQLKTAEDDGSMASGTEKVLRLVFMEELMERARNADSKGVSQVIYDMIAAGLSPGPRSFHGFVVSHVLNRDNDGAMHALRRELSEGLRPLHETFLALVRLFGAKGLATRGLEILAAMEKLKYDIRQAWLVLVEELVRSNHLEDANKVFLKGAEGGLRATDEIYDLLIEQDCKVGDHSNALTIAYEMEAAGRMATTFHFNCLLSVQATCGIPEIAFATFENMEYGEDHMKPDTETYNWVIQAYTRAESYDRVQDVAELLGMMVEDHKRVQPNVRTYALLVECFTKYCVVREAIRHFRGLKNFEGGTQVLYNDGKYGDPLSLYLRALCREGRIVELLEALEAMAKDNQPIPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYVAEGGLTGDRKRWVPRRGKTPLDPDAEGFIYSNPRETSFKQRCLEEWRLHHRKLLKTLHNEGPSILGKISESDYIRLVERLRKIIKGPEQNALKPKAASKMIVSELKEELEAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEELDELISRIKLHEGNTEFWKRRFLGEGLNENHVQQSEIIDLEPTDVVDDTDDAVDDISKEAEDDEAEDDEAQDEEEEVEQAESQPEVGDRKDKEVEAAKPLQMIGVQLLKDSDQTASSSRKSRRRLSRVAAVDDDDDDWFPLDIQEAFVEMRKRNIFDVSDMYTITDAWGWTWEKEIKNKAPQRWSQEWEVELGIKVMTKVIELGGTPTIGDCAVILRAAVRAPMPSAFLNILQTTHSLGYVFGSPLYDEIITLCLDLGELDAAIAIVADLETSGIKVPDETLDRVISARQSSDTPVNGSQ
Pentatricopeptide repeat-containing protein At1g74850, chloroplastic-like E 860 Nicotiana Tabacum , Synthetic Construct MSLSCNSFSPVFTPVPPSHRFLFPAKIPNYGKLSPVHRRLLLTVAVRAKPKELILGNPTVTVEKGKYSYDVETLINKLSSLPPRGSIARCLDTFKNKLSLTDFSHVFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTLMIGILGREGLLDKAFEIFDEMPSHSVARTVFSYTAIINAYGRNGQYGTSLQLLEKMKQEKIIPSILTYNTVINSCARGGHEWEGLLSLFAEMRHEGIQPDLVTYNTLLSACSSRGLGDEAEMVFRTMNEAGILPDVTTYSYLVDTFGKLGKLEKVSELLMEMEAGGTSPEVTSYNVLLEAYAHSGSMKEAMDVFRQMQTAGCVANAETYSVLLNLYGKNGRYDQVRDLFLEMKMSNTEPDADTYNILIQVFGEGGYFKEVVTLFHDMVEEKVEPNMETYEGLIYACGKGGLHDDAKRILLHMNGQGLVPSSKVYTGVIEAYGQAALYEEAVVAFNTMNEVGSRPMVETFNSLIHAFAKGGLYKESEAIWFRMGEVGVPRNRDSFNGMIEGYRQGGQFEEAIKAYVEMEKARCDPDERTLEAVLSVYCFAGLVDESEEQFQEIKSLGIQPSIICCCMMLAIYAKSERWNMAHELLNDVMTNKTSDMHQVIGQMIHGDFDDENNWQMVEYVFDKLNSEGCGLSMRFYNTLIEALWWLGQKERAARVLNEATKRGLFPELFRRNKLVWSVDVHRMWPGGACTAISVWLNDMEELFHKGEELPQLASVVVVRGQTEKSSITRDFPVAKAAYSFLKDTVSSSFCFPGWNKGRIVCQKTQLKRIFSSAEPSSGSSKGDRLIPLSNSPISLLGTQTSVSDAKRSESANADSKRSTKSDSELMASSV
Protein PLASTID TRANSCRIPTIONALLY ACTIVE 10-like F 682 Nicotiana Tabacum , Synthetic Construct MQTLQSSSLFFTFPSSKTLLKPQSSKFSSFSLFPSSLSKPSRPLTLHCFSSDEFPVGDDDAFLEAFGPKEKESEEEARRKNWVDRGWAPWEEILSPEANFARKSLNEGEEVALQSPEAIEAFKMLSPNYRKKKISDMGITEDEYYAKQFEIKGEIPEPLSTMWAGPLVVRHVPPRDWPPRGWEVDKKELEFIRETHKLQSVRVDYDKVEEMVKMETDDMGLDRYKMFLKQYNEWVAANKDRLEKESYKYDQDYYPGRRKRGKDYQDGMYELPFYYPGQICAGKVTAIHLYQGAFVDIGGVHDGWVPIKRNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFIDPNIDHLIFNRFDFAPIFHRDEDTNLDELRRDCGRQPLPRKDPGVKVEEEPLLSNHPYVDKLWQIHNAEQMILDDMEANPVKYKGKNLTELTDDEDFDEENRIEYSKAYYKKALLPKMITKVSVKELDLEAAFAERQHHNKLRMEAQERGEVYKIPKLRRNIEMDEYDFIHWRRSLEEREAMLRDISCRRALGLPLEEPGRYVDPSAFGKDQYDPDSPLYRYDYWGEPKNSEKSKQERMTDVHNKSIVGKGTVWYEMAYEDAVKERMQMEAQGIVRELYDEDSDSDEVGTDDDDDDEEDFDYSILGDPSANVSNQPYVNGTESRLSDEGMFEDKS
superoxide dismutase G 266 Nicotiana Tabacum , Synthetic Construct MSWSSCNSLCTSSSRQLLVTTDLSSQLNIPSRLSNVKRSLHGHHGVPKVFAYYGLKTPPYKLDALEPYMSQKMLEVHWGEHHRSYVEALNKQLEKNDILYGCTMEELIKVTYNNGNPLPEFSDAAQVWNHDFFWESMQPGGGDMPKLGLLQQIEKDFGSFTNFREKFTEAALALFGSGWIWLVLKREEKRLAIVKTSNAVNPLVWNDIPLIGLDLWEHAYYLDYKNDKAKYVNVFMNHLVSWDAALGRMARAQAFVNLGEPKIPVA
Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12-like H 531 Nicotiana Tabacum , Synthetic Construct MASVLSTSLYQDRGLRTMVSTDGFVPSFCCPYRKTLFTGTIPVSIWQFKLVSSSPFQKAPLAPCIKCENKEKDQASQGSFEQVSVERYPYHSYMDSTSGQLEPASGARASIPGQEYWPEGTASRVRAARAPEPTGTSTGTPSYGKNPGSRRKKYKASAAASKPSEINIISDDSAESPDNLPEEPKDLSSEYVIYQPEQEEEELTGYELDKRLGRPHPFIDPKTKKKIEKPLTSEELWWNWRKPEKEQWSRWQRRRPDVETVFLKAMAETGQVKLYGDHPTLTETALYRARRHLYKKERLQAEKEKLEKIGPIAYYSEWVQAWKKDTSREAIQKHFEETGEDENTQLIEMFCHQTDREYRIMMGTDIRIPRDPLAMRMREDQIKQIWGGDPVYPTINYIQDPDEVIDYRGPDFHEPTPNMLAYLKEHGKIISREELEKILAKEKTEEIEVAEIDEAMARAVDIGENDDEEEGSDAEVEEGDEKITRNWSVLKSNPELRKSKEKPKKKDMSLEEAVDDSENLTDFLMDFDEDE

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (24-mer) q 24 NA CGTTATTCACCATTAGCGTCTTGT
DNA (24-mer) r 24 NA ACAACTGCGATTACGTGAATAACG
RNA (27-mer) s 27 NA CUAAUAACAGAGGACGUGGUAAUCGCA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-09-06
Deposition Author(s): Wu, X.X. , Zhang, Y.