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8W2Z
Cas9d 6bp r-loop seed complex
PDB DOI: 10.2210/pdb8w2z/pdb
Classification: IMMUNE SYSTEM/RNA/DNA Organism(s): Deltaproteobacteria , Synthetic Construct
Deposited: 2024-02-21 Deposition Author(s): Bravo, J.P.K. , Fregoso Ocampo, R. , Taylor, D.W.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.37 Å
Cas9d 6bp r-loop seed complex
Bravo, J.P.K. , Fregoso Ocampo, R. , Taylor, D.W.
Primary Citation of Related Structures: 8W2Z
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| HNH nuclease domain-containing protein | A | 746 | Deltaproteobacteria , Synthetic Construct | MERELVLGIDYGGKYTGLAVVDRRHNQVLYANRLKMRDDVAGILKDRRKQRGIRRTAQTKKKRLRELKNYLKSIGYNESTATFETVYSLAHKRGYDYADMPEEKTSEEIEAMDVEERKQWEKEKQEWEETKRNSRHRKEVVKDVHKAMIEGRATEEQIKRVERIFNKQYRPKRFNNRILTKCKVEDCGVNTPLRKNVRDLLIENIVRFFPIESEKDNLKDAVLDKNRREEVKSFFRKHKTDEHIRKQVYDIADNKLSGRTVFCKEHILEHTEHSKEERKVFRLAPSLKTKIENVLAVIKDEILPKFTVNKVVMESNNFDIAAKTQGKKRLAKEEYGKGPREGKETRKEALLRETDGRCIYCGKSIDISNAHDDHIFPRKAGGLNIFANLVACCAVCNENKKGRTPLESGISPKPEIIAFMKNDLKKKILEDARNINTVDFNKYMSHASIGWRYMRDRLRESAGNKKLPIERQSGIYTAYFRRWWGFKKERGNTLHHALDAVILASRKGYSDDGLVDMTLKPKYNKGGEFDPEKHLPEPIEFKMDKGSRGSALHDRNPLSYKKGIITRRFMVTEIECGKEDDVISETYREKLKEAFKRFDTKKGKCLTDKEAKEAGFCIKKNELVMSLKCSIKGTGPGQMIRINNNVFKTNVHNVGVDVYLDEKGKKKAYERKNPRLSKHFIEPPPQPNGRVSFTLKRRDMVTVEGEDAIYRIKKLGTSPTIEAVVGSDGKTRTVSATKLTKANSAE |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| sgRNA | b | 158 | NA | GACGCAUAAAGAUGAGACGCGUUACAGUUAAGGCUCUGAAAAGAGCCUUAAUUGUAAAACGCCUAUACAGUGAAGGGAUAUACGCUUGGGUUUGUCCAGCCUGAGCCUCUAUGCCAGAAAUGGCGCCUUCAUCGUGGGUUAGGACAUUUAAUUUUUUU |
| DNA Target Strand | c | 55 | NA | AGCTGACGTTTGTACTCCAGCGTCTCATCTTTATGCGTCAGCAGAGATTTCTGCT |
| DNA Non-Target Strand | d | 14 | NA | CTGGAGTACAAACG |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-02-21 Deposition Author(s): Bravo, J.P.K. , Fregoso Ocampo, R. , Taylor, D.W.