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FASTA Sequence PDB Format mmCIF Format
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8VZM

Dna ligase 1 captured with pre-step 3 ligation at the ra:t nicksite

PDB DOI: 10.2210/pdb8vzm/pdb

Classification: Ligase/DNA
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2024-02-11
Deposition Author(s): Caglayan, M. , Gulkis, M. , Kanalelamparithi, B.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.51 Å

8vzm
Literature

Dna ligase 1 captured with pre-step 3 ligation at the ra:t nicksite

Caglayan, M. , Gulkis, M. , Kanalelamparithi, B.

Primary Citation of Related Structures: 8VZM


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA ligase 1 A 669 Homo Sapiens , Synthetic Construct LDPSGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLALGVGDGVLLKAVAQATGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQADNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDEDSEELQAICKLGTGFSDEELEEHHQSLKALVLPSPRPYVRIDGAVIPDHWLDPSAVWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQSQIQNQQGEDSGSDPEDTAAALEHHHHHH

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA/RNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*T)-R(P*A)-3') b 11 NA GCTGATGCGTA
DNA (5'-D(*GP*TP*CP*CP*GP*AP*CP*CP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') d 18 NA GTCCGACTACGCATCAGC
DNA (5'-D(P*GP*TP*CP*GP*GP*AP*C)-3') c 7 NA GTCGGAC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2024-02-11
Deposition Author(s): Caglayan, M. , Gulkis, M. , Kanalelamparithi, B.