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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8VYN

Soluble ectodomain of human cytomegalovirus (hcmv) glycoprotein b (gb) stabilized in a prefusion-like conformation in complex with 1g2 and 7h3, composite map (global and local) and model

PDB DOI: 10.2210/pdb8vyn/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Homo Sapiens , Human Betaherpesvirus 5

Deposited: 2024-02-09
Deposition Author(s): Byrne, P.O. , Mclellan, J.S. , Sponholtz, M.R.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.8 Å

Literature

Soluble ectodomain of human cytomegalovirus (hcmv) glycoprotein b (gb) stabilized in a prefusion-like conformation in complex with 1g2 and 7h3, composite map (global and local) and model

Byrne, P.O. , Mclellan, J.S. , Sponholtz, M.R.

Primary Citation of Related Structures: 8VYN


Proteins
Molecule Chains Sequence Length Organism Sequence
Envelope glycoprotein B A 786 Homo Sapiens , Human Betaherpesvirus 5 MESRIWCLVVCVNLCIVCLGAAVSSSSTRGTSATHSHHSSHTTSAAHSRSGSVSQRVTSSQTVSHGVNETIYNTTLKYGDVVGVNTTKYPYRVCSMAQGLDLIRFERNIVCTSMKPINEDLDEGIMVVYKRNICAHTFKVRVYQKVLTFRRSYAYIHTTYLLGSNTEYVAPPMWEIHHINSHSQCYSSYSRVIAGTVFVAYHRDSYENKTMQLMPDDYSNTCSTRYVTVKDQWHSRGSTWLYRETSNLNCMVTITTARSKYPYHFFITSTGDVVDISPFYNGTNRNASYFGENADKFFIFPNYTIVSDFGRPNSALETHRLVAFLERADSVISWDIQDEKNVTCQLTFWEASERTIRSEAEDSYHFSSAKMTATFLSKKQEVNMSDSALDCVRDEAINKLQQIFNTSYNQTYEKYGNVSVFETTGGLVVFWQGIKQKSLVELERLANRSSLNLTHNSTKSSTDGNNATHLSNMESVHNLVYAQLQFTYDTLRGYINRALAQIAEAWCVDQRRTLEVFKELSKINPSAILSAIYNKPIAARFMGDVLGLASCVTINQTSVKVLRDMNVKESPGRCYSRPVVIFNFANSSYVQYGQLGEDNEILLGNHRTEECQLPSLKIFIAGNSAYEYVDYLFKRMIDLSSISTVDSMIALDCDPLCNTDFRVLELYSQKELRSSNVFDLEEIMREFNSYKQRVKYVEDKVVDPGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGAAASLEVLFQGPGHHHHHHHHSAWSHPQFEKGGASGGGGSGGSAWSHPQFEK
Envelope glycoprotein B B 786 Homo Sapiens , Human Betaherpesvirus 5 MESRIWCLVVCVNLCIVCLGAAVSSSSTRGTSATHSHHSSHTTSAAHSRSGSVSQRVTSSQTVSHGVNETIYNTTLKYGDVVGVNTTKYPYRVCSMAQGLDLIRFERNIVCTSMKPINEDLDEGIMVVYKRNICAHTFKVRVYQKVLTFRRSYAYIHTTYLLGSNTEYVAPPMWEIHHINSHSQCYSSYSRVIAGTVFVAYHRDSYENKTMQLMPDDYSNTCSTRYVTVKDQWHSRGSTWLYRETSNLNCMVTITTARSKYPYHFFITSTGDVVDISPFYNGTNRNASYFGENADKFFIFPNYTIVSDFGRPNSALETHRLVAFLERADSVISWDIQDEKNVTCQLTFWEASERTIRSEAEDSYHFSSAKMTATFLSKKQEVNMSDSALDCVRDEAINKLQQIFNTSYNQTYEKYGNVSVFETTGGLVVFWQGIKQKSLVELERLANRSSLNLTHNSTKSSTDGNNATHLSNMESVHNLVYAQLQFTYDTLRGYINRALAQIAEAWCVDQRRTLEVFKELSKINPSAILSAIYNKPIAARFMGDVLGLASCVTINQTSVKVLRDMNVKESPGRCYSRPVVIFNFANSSYVQYGQLGEDNEILLGNHRTEECQLPSLKIFIAGNSAYEYVDYLFKRMIDLSSISTVDSMIALDCDPLCNTDFRVLELYSQKELRSSNVFDLEEIMREFNSYKQRVKYVEDKVVDPGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGAAASLEVLFQGPGHHHHHHHHSAWSHPQFEKGGASGGGGSGGSAWSHPQFEK
Envelope glycoprotein B C 786 Homo Sapiens , Human Betaherpesvirus 5 MESRIWCLVVCVNLCIVCLGAAVSSSSTRGTSATHSHHSSHTTSAAHSRSGSVSQRVTSSQTVSHGVNETIYNTTLKYGDVVGVNTTKYPYRVCSMAQGLDLIRFERNIVCTSMKPINEDLDEGIMVVYKRNICAHTFKVRVYQKVLTFRRSYAYIHTTYLLGSNTEYVAPPMWEIHHINSHSQCYSSYSRVIAGTVFVAYHRDSYENKTMQLMPDDYSNTCSTRYVTVKDQWHSRGSTWLYRETSNLNCMVTITTARSKYPYHFFITSTGDVVDISPFYNGTNRNASYFGENADKFFIFPNYTIVSDFGRPNSALETHRLVAFLERADSVISWDIQDEKNVTCQLTFWEASERTIRSEAEDSYHFSSAKMTATFLSKKQEVNMSDSALDCVRDEAINKLQQIFNTSYNQTYEKYGNVSVFETTGGLVVFWQGIKQKSLVELERLANRSSLNLTHNSTKSSTDGNNATHLSNMESVHNLVYAQLQFTYDTLRGYINRALAQIAEAWCVDQRRTLEVFKELSKINPSAILSAIYNKPIAARFMGDVLGLASCVTINQTSVKVLRDMNVKESPGRCYSRPVVIFNFANSSYVQYGQLGEDNEILLGNHRTEECQLPSLKIFIAGNSAYEYVDYLFKRMIDLSSISTVDSMIALDCDPLCNTDFRVLELYSQKELRSSNVFDLEEIMREFNSYKQRVKYVEDKVVDPGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGAAASLEVLFQGPGHHHHHHHHSAWSHPQFEKGGASGGGGSGGSAWSHPQFEK
7H3 Fab Heavy Chain D 234 Homo Sapiens , Human Betaherpesvirus 5 QVQLVQSGAEVKNPGASVKVSCKASGYTFTDYYIHWVRQAPGQGLEWMGWFNPNSGGTNFVQNFQGRVTMTRDTSISTAYMELSRLRSDDTAMYYCAKDSAKTASAYYGLNFFYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCD
7H3 Fab Heavy Chain H 234 Homo Sapiens , Human Betaherpesvirus 5 QVQLVQSGAEVKNPGASVKVSCKASGYTFTDYYIHWVRQAPGQGLEWMGWFNPNSGGTNFVQNFQGRVTMTRDTSISTAYMELSRLRSDDTAMYYCAKDSAKTASAYYGLNFFYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCD
7H3 Fab Heavy Chain L 234 Homo Sapiens , Human Betaherpesvirus 5 QVQLVQSGAEVKNPGASVKVSCKASGYTFTDYYIHWVRQAPGQGLEWMGWFNPNSGGTNFVQNFQGRVTMTRDTSISTAYMELSRLRSDDTAMYYCAKDSAKTASAYYGLNFFYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCD
7H3 Fab Light Chain E 216 Homo Sapiens , Human Betaherpesvirus 5 QSVLSQPPSASGTPGQRVTISCSGSSSNIGKNYVYWYQQVPGTAPKLLMFKNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCSAWDGSLSRPLFGGGTKVTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
7H3 Fab Light Chain I 216 Homo Sapiens , Human Betaherpesvirus 5 QSVLSQPPSASGTPGQRVTISCSGSSSNIGKNYVYWYQQVPGTAPKLLMFKNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCSAWDGSLSRPLFGGGTKVTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
7H3 Fab Light Chain M 216 Homo Sapiens , Human Betaherpesvirus 5 QSVLSQPPSASGTPGQRVTISCSGSSSNIGKNYVYWYQQVPGTAPKLLMFKNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCSAWDGSLSRPLFGGGTKVTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
1G2 Fab Heavy Chain F 224 Homo Sapiens , Human Betaherpesvirus 5 QLQLQESGPGLVKPSETLSLTCTVSGASIDRSTYYWGWIRQPPGKGLEWIANIYYNGRAVYSPSLKSRVTISVDTSKNQFSLKVRSLTAADTAVYYCATRWNYFFDFDYWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCD
1G2 Fab Heavy Chain J 224 Homo Sapiens , Human Betaherpesvirus 5 QLQLQESGPGLVKPSETLSLTCTVSGASIDRSTYYWGWIRQPPGKGLEWIANIYYNGRAVYSPSLKSRVTISVDTSKNQFSLKVRSLTAADTAVYYCATRWNYFFDFDYWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCD
1G2 Fab Heavy Chain N 224 Homo Sapiens , Human Betaherpesvirus 5 QLQLQESGPGLVKPSETLSLTCTVSGASIDRSTYYWGWIRQPPGKGLEWIANIYYNGRAVYSPSLKSRVTISVDTSKNQFSLKVRSLTAADTAVYYCATRWNYFFDFDYWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCD
1G2 Fab Light Chain G 214 Homo Sapiens , Human Betaherpesvirus 5 QSVLTQPPSASGTPGQRVTISCSGSSSNIETNYVSWYQQFPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAEYYCGTWDDNSWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
1G2 Fab Light Chain K 214 Homo Sapiens , Human Betaherpesvirus 5 QSVLTQPPSASGTPGQRVTISCSGSSSNIETNYVSWYQQFPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAEYYCGTWDDNSWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
1G2 Fab Light Chain O 214 Homo Sapiens , Human Betaherpesvirus 5 QSVLTQPPSASGTPGQRVTISCSGSSSNIETNYVSWYQQFPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAEYYCGTWDDNSWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-02-09
Deposition Author(s): Byrne, P.O. , Mclellan, J.S. , Sponholtz, M.R.