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8VNP

Homing endonuclease i-ppoi-dna complex at ph6.0 (k+ mes) with 0.2 m sodium malonate

PDB DOI: 10.2210/pdb8vnp/pdb

Classification: HYDROLASE
Organism(s): Physarum Polycephalum , Synthetic Construct

Deposited: 2024-01-13
Deposition Author(s): Chang, C. , Gao, Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.79 Å

Literature

Homing endonuclease i-ppoi-dna complex at ph6.0 (k+ mes) with 0.2 m sodium malonate

Chang, C. , Gao, Y.

Primary Citation of Related Structures: 8VNP


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3') c 21 NA TTGACTCTCTTAAGAGAGTCA
DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3') d 21 NA TTGACTCTCTTAAGAGAGTCA

Proteins
Molecule Chains Sequence Length Organism Sequence
Intron-encoded endonuclease I-PpoI A 162 Physarum Polycephalum , Synthetic Construct ALTNAQILAVIDSWEETVGQFPVITHHVPLGGGLQGTLHCYEIPLAAPYGVGFAKNGPTRWQYKRTINQVVHRWGSHTVPFLLEPDNINGKTCTASHLCHNTRCHNPLHLCWESLDDNKGRNWCPGPNGGCVHAVVCLRQGPLYGPGATVAGPQQRGSHFVV
Intron-encoded endonuclease I-PpoI B 162 Physarum Polycephalum , Synthetic Construct ALTNAQILAVIDSWEETVGQFPVITHHVPLGGGLQGTLHCYEIPLAAPYGVGFAKNGPTRWQYKRTINQVVHRWGSHTVPFLLEPDNINGKTCTASHLCHNTRCHNPLHLCWESLDDNKGRNWCPGPNGGCVHAVVCLRQGPLYGPGATVAGPQQRGSHFVV
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2024-01-13
Deposition Author(s): Chang, C. , Gao, Y.