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FASTA Sequence PDB Format mmCIF Format
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8VIF

Sars-cov-2 spike omicron (ba.1) ectodomain trimer in complex with sc27 fab, local refinement

PDB DOI: 10.2210/pdb8vif/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2024-01-04
Deposition Author(s): Byrne, P.O. , Mclellan, J.S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

8vif
Literature

Sars-cov-2 spike omicron (ba.1) ectodomain trimer in complex with sc27 fab, local refinement

Byrne, P.O. , Mclellan, J.S.

Primary Citation of Related Structures: 8VIF


Proteins
Molecule Chains Sequence Length Organism Sequence
SC27 Fab heavy chain H 128 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 VTLKESGPVLLKPTETLTLTCTVSGFSLSNVGMGVSWIRQPPGKALEWLADIFSNDEKSYSTSLKSRLTISRDTSKSQVVLSMTNMDPVDTATYYCARLANYDFWSGYSRFSAQFDNWGQGTLVTVSS
SC27 Fab light chain L 113 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQLPGTAPKLLIYDNNNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSFDSSSLTGSRVFGGGTKLTVL
Spike glycoprotein R 1306 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 METDTLLLWVLLLWVPGSTGDMFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHVISGTNGTKRFDNPVLPFNDGVYFASIEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLDHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPIIVREPEDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLKGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEYVNNSYECDIPIGAGICASYQTQTKSHGSASSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLKRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKYFGGFNFSQILPDPSKPSKRSPIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFKGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTPSALGKLQDVVNHNAQALNTLVKQLSSKFGAISSVLNDIFSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGRSLEVLFQGPGHHHHHHHHSAWSHPQFEKGGGSGGGGSGGSAWSHPQFEK
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-01-04
Deposition Author(s): Byrne, P.O. , Mclellan, J.S.