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FASTA Sequence PDB Format mmCIF Format
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8VDS

Dna ligase 1 with nick dna 3'rg:c

PDB DOI: 10.2210/pdb8vds/pdb

Classification: Ligase/DNA
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2023-12-17
Deposition Author(s): Caglayan, M. , Gulkis, M. , Kanalelamparithi, B.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.79 Å

8vds
Literature

Dna ligase 1 with nick dna 3'rg:c

Caglayan, M. , Gulkis, M. , Kanalelamparithi, B.

Primary Citation of Related Structures: 8VDS


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA ligase 1 A 658 Homo Sapiens , Synthetic Construct LDPSGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLALGVGDGVLLKAVAQATGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQADNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDEDSEELQAICKLGTGFSDEELEEHHQSLKALVLPSPRPYVRIDGAVIPDHWLDPSAVWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQSQIQNQQGEDSGSDPEDT

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA/RNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*T)-R(P*G)-D(P*GP*TP*CP*GP*GP*AP*C)-3') b 18 NA GCTGATGCGTGGTCGGAC
DNA (5'-D(*GP*TP*CP*CP*GP*AP*CP*CP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') c 18 NA GTCCGACCACGCATCAGC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2023-12-17
Deposition Author(s): Caglayan, M. , Gulkis, M. , Kanalelamparithi, B.