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FASTA Sequence PDB Format mmCIF Format
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8VB4

C12 portal and adaptor complex of the mature bacteriophage phim1 particle

PDB DOI: 10.2210/pdb8vb4/pdb

Classification: VIRAL PROTEIN
Organism(s): Pectobacterium Phage Phim1

Deposited: 2023-12-12
Deposition Author(s): Eruera, A. , Hodgkinson-Bean, J.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.98 Å

8vb4
Literature

C12 portal and adaptor complex of the mature bacteriophage phim1 particle

Eruera, A. , Hodgkinson-Bean, J.

Primary Citation of Related Structures: 8VB4


Proteins
Molecule Chains Sequence Length Organism Sequence
Portal protein (gp35) A 503 Pectobacterium Phage Phim1 MYTSSMTYESLYTKYRDDSAILKTEDYAHWTLPTVYADPDLREGKRVNVRRDYQSVGAVYVNTLSAKLAQVLFPANQAFFRIDSTGDAAQLAEAMGAESADLANGLAELENTAFRRIFLKSSYHQLVHAMKLLIITGNVLLYRDSNTGNMHAYSIRQYSVLRDGGGKVLDMVLKERTVISELPVEARIKYRNRKQDDCICLYTRIKRERRAVGEVFVVTQQLEDGLMLDNLEVYPEAICPFIPAVWNLVTGETYGRGLVEDYAGDLAKLSALSEALALYEIEACRVLHMAKPGSQIDVDSMAERESGAWVAGDPNGVAAYEAGDYNKIIALTQEIQSIAARLAPAFMYAQNQRNAERVTAEEIRQNAEEAELALGGVYSVIADTLHIPLAHILCWEVNQQFINELLSNGLTLSVLTGVAALSRSTDVNKLIQAAQSLSVILPVFQNTPRVDPEKILDMVLTGFGINTKDLYRTEEQLQALQAAQAPVTPDLANVAGTINETGL
Portal protein (gp35) B 503 Pectobacterium Phage Phim1 MYTSSMTYESLYTKYRDDSAILKTEDYAHWTLPTVYADPDLREGKRVNVRRDYQSVGAVYVNTLSAKLAQVLFPANQAFFRIDSTGDAAQLAEAMGAESADLANGLAELENTAFRRIFLKSSYHQLVHAMKLLIITGNVLLYRDSNTGNMHAYSIRQYSVLRDGGGKVLDMVLKERTVISELPVEARIKYRNRKQDDCICLYTRIKRERRAVGEVFVVTQQLEDGLMLDNLEVYPEAICPFIPAVWNLVTGETYGRGLVEDYAGDLAKLSALSEALALYEIEACRVLHMAKPGSQIDVDSMAERESGAWVAGDPNGVAAYEAGDYNKIIALTQEIQSIAARLAPAFMYAQNQRNAERVTAEEIRQNAEEAELALGGVYSVIADTLHIPLAHILCWEVNQQFINELLSNGLTLSVLTGVAALSRSTDVNKLIQAAQSLSVILPVFQNTPRVDPEKILDMVLTGFGINTKDLYRTEEQLQALQAAQAPVTPDLANVAGTINETGL
Portal protein (gp35) C 503 Pectobacterium Phage Phim1 MYTSSMTYESLYTKYRDDSAILKTEDYAHWTLPTVYADPDLREGKRVNVRRDYQSVGAVYVNTLSAKLAQVLFPANQAFFRIDSTGDAAQLAEAMGAESADLANGLAELENTAFRRIFLKSSYHQLVHAMKLLIITGNVLLYRDSNTGNMHAYSIRQYSVLRDGGGKVLDMVLKERTVISELPVEARIKYRNRKQDDCICLYTRIKRERRAVGEVFVVTQQLEDGLMLDNLEVYPEAICPFIPAVWNLVTGETYGRGLVEDYAGDLAKLSALSEALALYEIEACRVLHMAKPGSQIDVDSMAERESGAWVAGDPNGVAAYEAGDYNKIIALTQEIQSIAARLAPAFMYAQNQRNAERVTAEEIRQNAEEAELALGGVYSVIADTLHIPLAHILCWEVNQQFINELLSNGLTLSVLTGVAALSRSTDVNKLIQAAQSLSVILPVFQNTPRVDPEKILDMVLTGFGINTKDLYRTEEQLQALQAAQAPVTPDLANVAGTINETGL
Portal protein (gp35) D 503 Pectobacterium Phage Phim1 MYTSSMTYESLYTKYRDDSAILKTEDYAHWTLPTVYADPDLREGKRVNVRRDYQSVGAVYVNTLSAKLAQVLFPANQAFFRIDSTGDAAQLAEAMGAESADLANGLAELENTAFRRIFLKSSYHQLVHAMKLLIITGNVLLYRDSNTGNMHAYSIRQYSVLRDGGGKVLDMVLKERTVISELPVEARIKYRNRKQDDCICLYTRIKRERRAVGEVFVVTQQLEDGLMLDNLEVYPEAICPFIPAVWNLVTGETYGRGLVEDYAGDLAKLSALSEALALYEIEACRVLHMAKPGSQIDVDSMAERESGAWVAGDPNGVAAYEAGDYNKIIALTQEIQSIAARLAPAFMYAQNQRNAERVTAEEIRQNAEEAELALGGVYSVIADTLHIPLAHILCWEVNQQFINELLSNGLTLSVLTGVAALSRSTDVNKLIQAAQSLSVILPVFQNTPRVDPEKILDMVLTGFGINTKDLYRTEEQLQALQAAQAPVTPDLANVAGTINETGL
Portal protein (gp35) E 503 Pectobacterium Phage Phim1 MYTSSMTYESLYTKYRDDSAILKTEDYAHWTLPTVYADPDLREGKRVNVRRDYQSVGAVYVNTLSAKLAQVLFPANQAFFRIDSTGDAAQLAEAMGAESADLANGLAELENTAFRRIFLKSSYHQLVHAMKLLIITGNVLLYRDSNTGNMHAYSIRQYSVLRDGGGKVLDMVLKERTVISELPVEARIKYRNRKQDDCICLYTRIKRERRAVGEVFVVTQQLEDGLMLDNLEVYPEAICPFIPAVWNLVTGETYGRGLVEDYAGDLAKLSALSEALALYEIEACRVLHMAKPGSQIDVDSMAERESGAWVAGDPNGVAAYEAGDYNKIIALTQEIQSIAARLAPAFMYAQNQRNAERVTAEEIRQNAEEAELALGGVYSVIADTLHIPLAHILCWEVNQQFINELLSNGLTLSVLTGVAALSRSTDVNKLIQAAQSLSVILPVFQNTPRVDPEKILDMVLTGFGINTKDLYRTEEQLQALQAAQAPVTPDLANVAGTINETGL
Portal protein (gp35) F 503 Pectobacterium Phage Phim1 MYTSSMTYESLYTKYRDDSAILKTEDYAHWTLPTVYADPDLREGKRVNVRRDYQSVGAVYVNTLSAKLAQVLFPANQAFFRIDSTGDAAQLAEAMGAESADLANGLAELENTAFRRIFLKSSYHQLVHAMKLLIITGNVLLYRDSNTGNMHAYSIRQYSVLRDGGGKVLDMVLKERTVISELPVEARIKYRNRKQDDCICLYTRIKRERRAVGEVFVVTQQLEDGLMLDNLEVYPEAICPFIPAVWNLVTGETYGRGLVEDYAGDLAKLSALSEALALYEIEACRVLHMAKPGSQIDVDSMAERESGAWVAGDPNGVAAYEAGDYNKIIALTQEIQSIAARLAPAFMYAQNQRNAERVTAEEIRQNAEEAELALGGVYSVIADTLHIPLAHILCWEVNQQFINELLSNGLTLSVLTGVAALSRSTDVNKLIQAAQSLSVILPVFQNTPRVDPEKILDMVLTGFGINTKDLYRTEEQLQALQAAQAPVTPDLANVAGTINETGL
Portal protein (gp35) G 503 Pectobacterium Phage Phim1 MYTSSMTYESLYTKYRDDSAILKTEDYAHWTLPTVYADPDLREGKRVNVRRDYQSVGAVYVNTLSAKLAQVLFPANQAFFRIDSTGDAAQLAEAMGAESADLANGLAELENTAFRRIFLKSSYHQLVHAMKLLIITGNVLLYRDSNTGNMHAYSIRQYSVLRDGGGKVLDMVLKERTVISELPVEARIKYRNRKQDDCICLYTRIKRERRAVGEVFVVTQQLEDGLMLDNLEVYPEAICPFIPAVWNLVTGETYGRGLVEDYAGDLAKLSALSEALALYEIEACRVLHMAKPGSQIDVDSMAERESGAWVAGDPNGVAAYEAGDYNKIIALTQEIQSIAARLAPAFMYAQNQRNAERVTAEEIRQNAEEAELALGGVYSVIADTLHIPLAHILCWEVNQQFINELLSNGLTLSVLTGVAALSRSTDVNKLIQAAQSLSVILPVFQNTPRVDPEKILDMVLTGFGINTKDLYRTEEQLQALQAAQAPVTPDLANVAGTINETGL
Portal protein (gp35) H 503 Pectobacterium Phage Phim1 MYTSSMTYESLYTKYRDDSAILKTEDYAHWTLPTVYADPDLREGKRVNVRRDYQSVGAVYVNTLSAKLAQVLFPANQAFFRIDSTGDAAQLAEAMGAESADLANGLAELENTAFRRIFLKSSYHQLVHAMKLLIITGNVLLYRDSNTGNMHAYSIRQYSVLRDGGGKVLDMVLKERTVISELPVEARIKYRNRKQDDCICLYTRIKRERRAVGEVFVVTQQLEDGLMLDNLEVYPEAICPFIPAVWNLVTGETYGRGLVEDYAGDLAKLSALSEALALYEIEACRVLHMAKPGSQIDVDSMAERESGAWVAGDPNGVAAYEAGDYNKIIALTQEIQSIAARLAPAFMYAQNQRNAERVTAEEIRQNAEEAELALGGVYSVIADTLHIPLAHILCWEVNQQFINELLSNGLTLSVLTGVAALSRSTDVNKLIQAAQSLSVILPVFQNTPRVDPEKILDMVLTGFGINTKDLYRTEEQLQALQAAQAPVTPDLANVAGTINETGL
Portal protein (gp35) I 503 Pectobacterium Phage Phim1 MYTSSMTYESLYTKYRDDSAILKTEDYAHWTLPTVYADPDLREGKRVNVRRDYQSVGAVYVNTLSAKLAQVLFPANQAFFRIDSTGDAAQLAEAMGAESADLANGLAELENTAFRRIFLKSSYHQLVHAMKLLIITGNVLLYRDSNTGNMHAYSIRQYSVLRDGGGKVLDMVLKERTVISELPVEARIKYRNRKQDDCICLYTRIKRERRAVGEVFVVTQQLEDGLMLDNLEVYPEAICPFIPAVWNLVTGETYGRGLVEDYAGDLAKLSALSEALALYEIEACRVLHMAKPGSQIDVDSMAERESGAWVAGDPNGVAAYEAGDYNKIIALTQEIQSIAARLAPAFMYAQNQRNAERVTAEEIRQNAEEAELALGGVYSVIADTLHIPLAHILCWEVNQQFINELLSNGLTLSVLTGVAALSRSTDVNKLIQAAQSLSVILPVFQNTPRVDPEKILDMVLTGFGINTKDLYRTEEQLQALQAAQAPVTPDLANVAGTINETGL
Portal protein (gp35) J 503 Pectobacterium Phage Phim1 MYTSSMTYESLYTKYRDDSAILKTEDYAHWTLPTVYADPDLREGKRVNVRRDYQSVGAVYVNTLSAKLAQVLFPANQAFFRIDSTGDAAQLAEAMGAESADLANGLAELENTAFRRIFLKSSYHQLVHAMKLLIITGNVLLYRDSNTGNMHAYSIRQYSVLRDGGGKVLDMVLKERTVISELPVEARIKYRNRKQDDCICLYTRIKRERRAVGEVFVVTQQLEDGLMLDNLEVYPEAICPFIPAVWNLVTGETYGRGLVEDYAGDLAKLSALSEALALYEIEACRVLHMAKPGSQIDVDSMAERESGAWVAGDPNGVAAYEAGDYNKIIALTQEIQSIAARLAPAFMYAQNQRNAERVTAEEIRQNAEEAELALGGVYSVIADTLHIPLAHILCWEVNQQFINELLSNGLTLSVLTGVAALSRSTDVNKLIQAAQSLSVILPVFQNTPRVDPEKILDMVLTGFGINTKDLYRTEEQLQALQAAQAPVTPDLANVAGTINETGL
Portal protein (gp35) K 503 Pectobacterium Phage Phim1 MYTSSMTYESLYTKYRDDSAILKTEDYAHWTLPTVYADPDLREGKRVNVRRDYQSVGAVYVNTLSAKLAQVLFPANQAFFRIDSTGDAAQLAEAMGAESADLANGLAELENTAFRRIFLKSSYHQLVHAMKLLIITGNVLLYRDSNTGNMHAYSIRQYSVLRDGGGKVLDMVLKERTVISELPVEARIKYRNRKQDDCICLYTRIKRERRAVGEVFVVTQQLEDGLMLDNLEVYPEAICPFIPAVWNLVTGETYGRGLVEDYAGDLAKLSALSEALALYEIEACRVLHMAKPGSQIDVDSMAERESGAWVAGDPNGVAAYEAGDYNKIIALTQEIQSIAARLAPAFMYAQNQRNAERVTAEEIRQNAEEAELALGGVYSVIADTLHIPLAHILCWEVNQQFINELLSNGLTLSVLTGVAALSRSTDVNKLIQAAQSLSVILPVFQNTPRVDPEKILDMVLTGFGINTKDLYRTEEQLQALQAAQAPVTPDLANVAGTINETGL
Portal protein (gp35) L 503 Pectobacterium Phage Phim1 MYTSSMTYESLYTKYRDDSAILKTEDYAHWTLPTVYADPDLREGKRVNVRRDYQSVGAVYVNTLSAKLAQVLFPANQAFFRIDSTGDAAQLAEAMGAESADLANGLAELENTAFRRIFLKSSYHQLVHAMKLLIITGNVLLYRDSNTGNMHAYSIRQYSVLRDGGGKVLDMVLKERTVISELPVEARIKYRNRKQDDCICLYTRIKRERRAVGEVFVVTQQLEDGLMLDNLEVYPEAICPFIPAVWNLVTGETYGRGLVEDYAGDLAKLSALSEALALYEIEACRVLHMAKPGSQIDVDSMAERESGAWVAGDPNGVAAYEAGDYNKIIALTQEIQSIAARLAPAFMYAQNQRNAERVTAEEIRQNAEEAELALGGVYSVIADTLHIPLAHILCWEVNQQFINELLSNGLTLSVLTGVAALSRSTDVNKLIQAAQSLSVILPVFQNTPRVDPEKILDMVLTGFGINTKDLYRTEEQLQALQAAQAPVTPDLANVAGTINETGL
Adaptor protein (gp52) M 185 Pectobacterium Phage Phim1 MELLDAVNTCLTALGEARVTSTDTRHPSVALILQTLATKQKLLLERGWWFNTQDEEMFPDLLGRIPYPAASISVESLDGYNIYSKRNNFLFNNTCNTMYFTGPVCIRVTYNLDFEDLPESVATVITYRAARAVYVGDLGNDASVQDLVLNEQQAMLLVEEQHMRNKKHSTRRRRPWGKYQNALSG
Adaptor protein (gp52) N 185 Pectobacterium Phage Phim1 MELLDAVNTCLTALGEARVTSTDTRHPSVALILQTLATKQKLLLERGWWFNTQDEEMFPDLLGRIPYPAASISVESLDGYNIYSKRNNFLFNNTCNTMYFTGPVCIRVTYNLDFEDLPESVATVITYRAARAVYVGDLGNDASVQDLVLNEQQAMLLVEEQHMRNKKHSTRRRRPWGKYQNALSG
Adaptor protein (gp52) O 185 Pectobacterium Phage Phim1 MELLDAVNTCLTALGEARVTSTDTRHPSVALILQTLATKQKLLLERGWWFNTQDEEMFPDLLGRIPYPAASISVESLDGYNIYSKRNNFLFNNTCNTMYFTGPVCIRVTYNLDFEDLPESVATVITYRAARAVYVGDLGNDASVQDLVLNEQQAMLLVEEQHMRNKKHSTRRRRPWGKYQNALSG
Adaptor protein (gp52) P 185 Pectobacterium Phage Phim1 MELLDAVNTCLTALGEARVTSTDTRHPSVALILQTLATKQKLLLERGWWFNTQDEEMFPDLLGRIPYPAASISVESLDGYNIYSKRNNFLFNNTCNTMYFTGPVCIRVTYNLDFEDLPESVATVITYRAARAVYVGDLGNDASVQDLVLNEQQAMLLVEEQHMRNKKHSTRRRRPWGKYQNALSG
Adaptor protein (gp52) Q 185 Pectobacterium Phage Phim1 MELLDAVNTCLTALGEARVTSTDTRHPSVALILQTLATKQKLLLERGWWFNTQDEEMFPDLLGRIPYPAASISVESLDGYNIYSKRNNFLFNNTCNTMYFTGPVCIRVTYNLDFEDLPESVATVITYRAARAVYVGDLGNDASVQDLVLNEQQAMLLVEEQHMRNKKHSTRRRRPWGKYQNALSG
Adaptor protein (gp52) R 185 Pectobacterium Phage Phim1 MELLDAVNTCLTALGEARVTSTDTRHPSVALILQTLATKQKLLLERGWWFNTQDEEMFPDLLGRIPYPAASISVESLDGYNIYSKRNNFLFNNTCNTMYFTGPVCIRVTYNLDFEDLPESVATVITYRAARAVYVGDLGNDASVQDLVLNEQQAMLLVEEQHMRNKKHSTRRRRPWGKYQNALSG
Adaptor protein (gp52) S 185 Pectobacterium Phage Phim1 MELLDAVNTCLTALGEARVTSTDTRHPSVALILQTLATKQKLLLERGWWFNTQDEEMFPDLLGRIPYPAASISVESLDGYNIYSKRNNFLFNNTCNTMYFTGPVCIRVTYNLDFEDLPESVATVITYRAARAVYVGDLGNDASVQDLVLNEQQAMLLVEEQHMRNKKHSTRRRRPWGKYQNALSG
Adaptor protein (gp52) T 185 Pectobacterium Phage Phim1 MELLDAVNTCLTALGEARVTSTDTRHPSVALILQTLATKQKLLLERGWWFNTQDEEMFPDLLGRIPYPAASISVESLDGYNIYSKRNNFLFNNTCNTMYFTGPVCIRVTYNLDFEDLPESVATVITYRAARAVYVGDLGNDASVQDLVLNEQQAMLLVEEQHMRNKKHSTRRRRPWGKYQNALSG
Adaptor protein (gp52) U 185 Pectobacterium Phage Phim1 MELLDAVNTCLTALGEARVTSTDTRHPSVALILQTLATKQKLLLERGWWFNTQDEEMFPDLLGRIPYPAASISVESLDGYNIYSKRNNFLFNNTCNTMYFTGPVCIRVTYNLDFEDLPESVATVITYRAARAVYVGDLGNDASVQDLVLNEQQAMLLVEEQHMRNKKHSTRRRRPWGKYQNALSG
Adaptor protein (gp52) V 185 Pectobacterium Phage Phim1 MELLDAVNTCLTALGEARVTSTDTRHPSVALILQTLATKQKLLLERGWWFNTQDEEMFPDLLGRIPYPAASISVESLDGYNIYSKRNNFLFNNTCNTMYFTGPVCIRVTYNLDFEDLPESVATVITYRAARAVYVGDLGNDASVQDLVLNEQQAMLLVEEQHMRNKKHSTRRRRPWGKYQNALSG
Adaptor protein (gp52) W 185 Pectobacterium Phage Phim1 MELLDAVNTCLTALGEARVTSTDTRHPSVALILQTLATKQKLLLERGWWFNTQDEEMFPDLLGRIPYPAASISVESLDGYNIYSKRNNFLFNNTCNTMYFTGPVCIRVTYNLDFEDLPESVATVITYRAARAVYVGDLGNDASVQDLVLNEQQAMLLVEEQHMRNKKHSTRRRRPWGKYQNALSG
Adaptor protein (gp52) X 185 Pectobacterium Phage Phim1 MELLDAVNTCLTALGEARVTSTDTRHPSVALILQTLATKQKLLLERGWWFNTQDEEMFPDLLGRIPYPAASISVESLDGYNIYSKRNNFLFNNTCNTMYFTGPVCIRVTYNLDFEDLPESVATVITYRAARAVYVGDLGNDASVQDLVLNEQQAMLLVEEQHMRNKKHSTRRRRPWGKYQNALSG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-12-12
Deposition Author(s): Eruera, A. , Hodgkinson-Bean, J.