PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8VB0

Asymmetric unit of bacteriophage phim1 mature capsid

PDB DOI: 10.2210/pdb8vb0/pdb

Classification: VIRUS
Organism(s): Pectobacterium Phage Phim1

Deposited: 2023-12-11
Deposition Author(s): Eruera, A. , Hodgkinson-Bean, J.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.04 Å

8vb0
Literature

Asymmetric unit of bacteriophage phim1 mature capsid

Eruera, A. , Hodgkinson-Bean, J.

Primary Citation of Related Structures: 8VB0


Proteins
Molecule Chains Sequence Length Organism Sequence
Major capsid protein (gp38) A 327 Pectobacterium Phage Phim1 MSDTPYKADLSRVHWAGSNSDVDIHLEIFEGDVDSGFMYNSFFRGNSSYVSVQDQSNQARIDRMNTVTIKGRTPGQKLDRESVKNDKLVITVDTVTYASTVMDWQDDWTSPDRWAEIGAQHGYQHARLFDTAHLIQIIKARKWIAPADLKPAFFDGKEYTAAYNADRELFAANIIDAHRQGIEEMVRRDLGGSLTEFITVVSPYVFGLLLDSKKLVNVDYSAGNGNFAERRVGMVNGVRIVESARFPAAAGTSPLGAAFTVDADDVACQMVVYHPKMTLVTVEAKPLATNKYPDNPNFSDILDSFTLYTVGQRRPDTSFAVKLTNLP
Major capsid protein (gp38) B 327 Pectobacterium Phage Phim1 MSDTPYKADLSRVHWAGSNSDVDIHLEIFEGDVDSGFMYNSFFRGNSSYVSVQDQSNQARIDRMNTVTIKGRTPGQKLDRESVKNDKLVITVDTVTYASTVMDWQDDWTSPDRWAEIGAQHGYQHARLFDTAHLIQIIKARKWIAPADLKPAFFDGKEYTAAYNADRELFAANIIDAHRQGIEEMVRRDLGGSLTEFITVVSPYVFGLLLDSKKLVNVDYSAGNGNFAERRVGMVNGVRIVESARFPAAAGTSPLGAAFTVDADDVACQMVVYHPKMTLVTVEAKPLATNKYPDNPNFSDILDSFTLYTVGQRRPDTSFAVKLTNLP
Major capsid protein (gp38) C 327 Pectobacterium Phage Phim1 MSDTPYKADLSRVHWAGSNSDVDIHLEIFEGDVDSGFMYNSFFRGNSSYVSVQDQSNQARIDRMNTVTIKGRTPGQKLDRESVKNDKLVITVDTVTYASTVMDWQDDWTSPDRWAEIGAQHGYQHARLFDTAHLIQIIKARKWIAPADLKPAFFDGKEYTAAYNADRELFAANIIDAHRQGIEEMVRRDLGGSLTEFITVVSPYVFGLLLDSKKLVNVDYSAGNGNFAERRVGMVNGVRIVESARFPAAAGTSPLGAAFTVDADDVACQMVVYHPKMTLVTVEAKPLATNKYPDNPNFSDILDSFTLYTVGQRRPDTSFAVKLTNLP
Major capsid protein (gp38) D 327 Pectobacterium Phage Phim1 MSDTPYKADLSRVHWAGSNSDVDIHLEIFEGDVDSGFMYNSFFRGNSSYVSVQDQSNQARIDRMNTVTIKGRTPGQKLDRESVKNDKLVITVDTVTYASTVMDWQDDWTSPDRWAEIGAQHGYQHARLFDTAHLIQIIKARKWIAPADLKPAFFDGKEYTAAYNADRELFAANIIDAHRQGIEEMVRRDLGGSLTEFITVVSPYVFGLLLDSKKLVNVDYSAGNGNFAERRVGMVNGVRIVESARFPAAAGTSPLGAAFTVDADDVACQMVVYHPKMTLVTVEAKPLATNKYPDNPNFSDILDSFTLYTVGQRRPDTSFAVKLTNLP
Major capsid protein (gp38) E 327 Pectobacterium Phage Phim1 MSDTPYKADLSRVHWAGSNSDVDIHLEIFEGDVDSGFMYNSFFRGNSSYVSVQDQSNQARIDRMNTVTIKGRTPGQKLDRESVKNDKLVITVDTVTYASTVMDWQDDWTSPDRWAEIGAQHGYQHARLFDTAHLIQIIKARKWIAPADLKPAFFDGKEYTAAYNADRELFAANIIDAHRQGIEEMVRRDLGGSLTEFITVVSPYVFGLLLDSKKLVNVDYSAGNGNFAERRVGMVNGVRIVESARFPAAAGTSPLGAAFTVDADDVACQMVVYHPKMTLVTVEAKPLATNKYPDNPNFSDILDSFTLYTVGQRRPDTSFAVKLTNLP
Major capsid protein (gp38) F 327 Pectobacterium Phage Phim1 MSDTPYKADLSRVHWAGSNSDVDIHLEIFEGDVDSGFMYNSFFRGNSSYVSVQDQSNQARIDRMNTVTIKGRTPGQKLDRESVKNDKLVITVDTVTYASTVMDWQDDWTSPDRWAEIGAQHGYQHARLFDTAHLIQIIKARKWIAPADLKPAFFDGKEYTAAYNADRELFAANIIDAHRQGIEEMVRRDLGGSLTEFITVVSPYVFGLLLDSKKLVNVDYSAGNGNFAERRVGMVNGVRIVESARFPAAAGTSPLGAAFTVDADDVACQMVVYHPKMTLVTVEAKPLATNKYPDNPNFSDILDSFTLYTVGQRRPDTSFAVKLTNLP
Major capsid protein (gp38) G 327 Pectobacterium Phage Phim1 MSDTPYKADLSRVHWAGSNSDVDIHLEIFEGDVDSGFMYNSFFRGNSSYVSVQDQSNQARIDRMNTVTIKGRTPGQKLDRESVKNDKLVITVDTVTYASTVMDWQDDWTSPDRWAEIGAQHGYQHARLFDTAHLIQIIKARKWIAPADLKPAFFDGKEYTAAYNADRELFAANIIDAHRQGIEEMVRRDLGGSLTEFITVVSPYVFGLLLDSKKLVNVDYSAGNGNFAERRVGMVNGVRIVESARFPAAAGTSPLGAAFTVDADDVACQMVVYHPKMTLVTVEAKPLATNKYPDNPNFSDILDSFTLYTVGQRRPDTSFAVKLTNLP
Alpha-claw decoration protein (gp44) H 62 Pectobacterium Phage Phim1 MAITTGTTEAQALNMTMRDAVLKVAPGVQQLVQNSSQLTAAEIAIIQTNITALKAAFTAAGA
Alpha-claw decoration protein (gp44) I 62 Pectobacterium Phage Phim1 MAITTGTTEAQALNMTMRDAVLKVAPGVQQLVQNSSQLTAAEIAIIQTNITALKAAFTAAGA
Alpha-claw decoration protein (gp44) K 62 Pectobacterium Phage Phim1 MAITTGTTEAQALNMTMRDAVLKVAPGVQQLVQNSSQLTAAEIAIIQTNITALKAAFTAAGA
Alpha-claw decoration protein (gp44) L 62 Pectobacterium Phage Phim1 MAITTGTTEAQALNMTMRDAVLKVAPGVQQLVQNSSQLTAAEIAIIQTNITALKAAFTAAGA
Alpha-claw decoration protein (gp44) M 62 Pectobacterium Phage Phim1 MAITTGTTEAQALNMTMRDAVLKVAPGVQQLVQNSSQLTAAEIAIIQTNITALKAAFTAAGA
Alpha-paw decoration protein (gp43) J 179 Pectobacterium Phage Phim1 MSLVTATAAQRIALRNTATNLSEQTQVYAQSATAPTAAEAAIVQPYIDAAQAAITAVGAGGATVANGATVAVVNSASADSHNATATVTGTTLTNVKLAATVAFVDNADTITVQNSAGTAVAGTHTATVAAGVISNVKLAATIAPVASGLALTGVTPTGTYTNTVTFTVAAGVITAIVLS
Alpha-paw decoration protein (gp43) N 179 Pectobacterium Phage Phim1 MSLVTATAAQRIALRNTATNLSEQTQVYAQSATAPTAAEAAIVQPYIDAAQAAITAVGAGGATVANGATVAVVNSASADSHNATATVTGTTLTNVKLAATVAFVDNADTITVQNSAGTAVAGTHTATVAAGVISNVKLAATIAPVASGLALTGVTPTGTYTNTVTFTVAAGVITAIVLS
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-12-11
Deposition Author(s): Eruera, A. , Hodgkinson-Bean, J.