PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8V3B

Computational designed nanocage o43_129_+4

PDB DOI: 10.2210/pdb8v3b/pdb

Classification: DE NOVO PROTEIN
Organism(s): Synthetic Construct

Deposited: 2023-11-27
Deposition Author(s): Borst, A.J. , Carr, K.D. , Weidle, C.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 6.4 Å

8v3b
Literature

Computational designed nanocage o43_129_+4

Borst, A.J. , Carr, K.D. , Weidle, C.

Primary Citation of Related Structures: 8V3B


Proteins
Molecule Chains Sequence Length Organism Sequence
O43_129_+4 component B A 418 Synthetic Construct MGDDLLLKLLELLVEQARVSAEFARRQGDEKMLEEVARKAEEVARKAEEIARKARKEGNLELALKALEILVRAAHVLAEIARERGNEELQKKAHKLAKEALRQVIEIAIRAIQEGNLELAIIALHISVRIAEVLLETRPDDREEIREQQAIFELLIAALEAAIRLEKLKEEGAPPEQIERVAEHGLERLKEIAKEISKEVDSPESKRIAYKIVAAAAEFLLKILAEGGATPEQLERVTEHALEVLKEVAKELADSPESVREAVRLISKLTQEGLKQLKEIGAPPEQIERVAEHGLEVLKEIAKYGSKLTDSPELKRELYRIISETAKELLKILAEGGATPEQLERVTKHALEVLKEVAKELADSPESGLAALAAIASLAKLGLEQLKEIGAPPEQQRRVTKAGIEAVREIYRYGRKLY
O43_129_+4 component B B 418 Synthetic Construct MGDDLLLKLLELLVEQARVSAEFARRQGDEKMLEEVARKAEEVARKAEEIARKARKEGNLELALKALEILVRAAHVLAEIARERGNEELQKKAHKLAKEALRQVIEIAIRAIQEGNLELAIIALHISVRIAEVLLETRPDDREEIREQQAIFELLIAALEAAIRLEKLKEEGAPPEQIERVAEHGLERLKEIAKEISKEVDSPESKRIAYKIVAAAAEFLLKILAEGGATPEQLERVTEHALEVLKEVAKELADSPESVREAVRLISKLTQEGLKQLKEIGAPPEQIERVAEHGLEVLKEIAKYGSKLTDSPELKRELYRIISETAKELLKILAEGGATPEQLERVTKHALEVLKEVAKELADSPESGLAALAAIASLAKLGLEQLKEIGAPPEQQRRVTKAGIEAVREIYRYGRKLY
O43_129_+4 component B C 418 Synthetic Construct MGDDLLLKLLELLVEQARVSAEFARRQGDEKMLEEVARKAEEVARKAEEIARKARKEGNLELALKALEILVRAAHVLAEIARERGNEELQKKAHKLAKEALRQVIEIAIRAIQEGNLELAIIALHISVRIAEVLLETRPDDREEIREQQAIFELLIAALEAAIRLEKLKEEGAPPEQIERVAEHGLERLKEIAKEISKEVDSPESKRIAYKIVAAAAEFLLKILAEGGATPEQLERVTEHALEVLKEVAKELADSPESVREAVRLISKLTQEGLKQLKEIGAPPEQIERVAEHGLEVLKEIAKYGSKLTDSPELKRELYRIISETAKELLKILAEGGATPEQLERVTKHALEVLKEVAKELADSPESGLAALAAIASLAKLGLEQLKEIGAPPEQQRRVTKAGIEAVREIYRYGRKLY
O43_129_+4 component B D 418 Synthetic Construct MGDDLLLKLLELLVEQARVSAEFARRQGDEKMLEEVARKAEEVARKAEEIARKARKEGNLELALKALEILVRAAHVLAEIARERGNEELQKKAHKLAKEALRQVIEIAIRAIQEGNLELAIIALHISVRIAEVLLETRPDDREEIREQQAIFELLIAALEAAIRLEKLKEEGAPPEQIERVAEHGLERLKEIAKEISKEVDSPESKRIAYKIVAAAAEFLLKILAEGGATPEQLERVTEHALEVLKEVAKELADSPESVREAVRLISKLTQEGLKQLKEIGAPPEQIERVAEHGLEVLKEIAKYGSKLTDSPELKRELYRIISETAKELLKILAEGGATPEQLERVTKHALEVLKEVAKELADSPESGLAALAAIASLAKLGLEQLKEIGAPPEQQRRVTKAGIEAVREIYRYGRKLY
O43_129_+4 component B E 418 Synthetic Construct MGDDLLLKLLELLVEQARVSAEFARRQGDEKMLEEVARKAEEVARKAEEIARKARKEGNLELALKALEILVRAAHVLAEIARERGNEELQKKAHKLAKEALRQVIEIAIRAIQEGNLELAIIALHISVRIAEVLLETRPDDREEIREQQAIFELLIAALEAAIRLEKLKEEGAPPEQIERVAEHGLERLKEIAKEISKEVDSPESKRIAYKIVAAAAEFLLKILAEGGATPEQLERVTEHALEVLKEVAKELADSPESVREAVRLISKLTQEGLKQLKEIGAPPEQIERVAEHGLEVLKEIAKYGSKLTDSPELKRELYRIISETAKELLKILAEGGATPEQLERVTKHALEVLKEVAKELADSPESGLAALAAIASLAKLGLEQLKEIGAPPEQQRRVTKAGIEAVREIYRYGRKLY
O43_129_+4 component B F 418 Synthetic Construct MGDDLLLKLLELLVEQARVSAEFARRQGDEKMLEEVARKAEEVARKAEEIARKARKEGNLELALKALEILVRAAHVLAEIARERGNEELQKKAHKLAKEALRQVIEIAIRAIQEGNLELAIIALHISVRIAEVLLETRPDDREEIREQQAIFELLIAALEAAIRLEKLKEEGAPPEQIERVAEHGLERLKEIAKEISKEVDSPESKRIAYKIVAAAAEFLLKILAEGGATPEQLERVTEHALEVLKEVAKELADSPESVREAVRLISKLTQEGLKQLKEIGAPPEQIERVAEHGLEVLKEIAKYGSKLTDSPELKRELYRIISETAKELLKILAEGGATPEQLERVTKHALEVLKEVAKELADSPESGLAALAAIASLAKLGLEQLKEIGAPPEQQRRVTKAGIEAVREIYRYGRKLY
O43_129_+4 component B G 418 Synthetic Construct MGDDLLLKLLELLVEQARVSAEFARRQGDEKMLEEVARKAEEVARKAEEIARKARKEGNLELALKALEILVRAAHVLAEIARERGNEELQKKAHKLAKEALRQVIEIAIRAIQEGNLELAIIALHISVRIAEVLLETRPDDREEIREQQAIFELLIAALEAAIRLEKLKEEGAPPEQIERVAEHGLERLKEIAKEISKEVDSPESKRIAYKIVAAAAEFLLKILAEGGATPEQLERVTEHALEVLKEVAKELADSPESVREAVRLISKLTQEGLKQLKEIGAPPEQIERVAEHGLEVLKEIAKYGSKLTDSPELKRELYRIISETAKELLKILAEGGATPEQLERVTKHALEVLKEVAKELADSPESGLAALAAIASLAKLGLEQLKEIGAPPEQQRRVTKAGIEAVREIYRYGRKLY
O43_129_+4 component B H 418 Synthetic Construct MGDDLLLKLLELLVEQARVSAEFARRQGDEKMLEEVARKAEEVARKAEEIARKARKEGNLELALKALEILVRAAHVLAEIARERGNEELQKKAHKLAKEALRQVIEIAIRAIQEGNLELAIIALHISVRIAEVLLETRPDDREEIREQQAIFELLIAALEAAIRLEKLKEEGAPPEQIERVAEHGLERLKEIAKEISKEVDSPESKRIAYKIVAAAAEFLLKILAEGGATPEQLERVTEHALEVLKEVAKELADSPESVREAVRLISKLTQEGLKQLKEIGAPPEQIERVAEHGLEVLKEIAKYGSKLTDSPELKRELYRIISETAKELLKILAEGGATPEQLERVTKHALEVLKEVAKELADSPESGLAALAAIASLAKLGLEQLKEIGAPPEQQRRVTKAGIEAVREIYRYGRKLY
O43_129_+4 component B I 418 Synthetic Construct MGDDLLLKLLELLVEQARVSAEFARRQGDEKMLEEVARKAEEVARKAEEIARKARKEGNLELALKALEILVRAAHVLAEIARERGNEELQKKAHKLAKEALRQVIEIAIRAIQEGNLELAIIALHISVRIAEVLLETRPDDREEIREQQAIFELLIAALEAAIRLEKLKEEGAPPEQIERVAEHGLERLKEIAKEISKEVDSPESKRIAYKIVAAAAEFLLKILAEGGATPEQLERVTEHALEVLKEVAKELADSPESVREAVRLISKLTQEGLKQLKEIGAPPEQIERVAEHGLEVLKEIAKYGSKLTDSPELKRELYRIISETAKELLKILAEGGATPEQLERVTKHALEVLKEVAKELADSPESGLAALAAIASLAKLGLEQLKEIGAPPEQQRRVTKAGIEAVREIYRYGRKLY
O43_129_+4 component B J 418 Synthetic Construct MGDDLLLKLLELLVEQARVSAEFARRQGDEKMLEEVARKAEEVARKAEEIARKARKEGNLELALKALEILVRAAHVLAEIARERGNEELQKKAHKLAKEALRQVIEIAIRAIQEGNLELAIIALHISVRIAEVLLETRPDDREEIREQQAIFELLIAALEAAIRLEKLKEEGAPPEQIERVAEHGLERLKEIAKEISKEVDSPESKRIAYKIVAAAAEFLLKILAEGGATPEQLERVTEHALEVLKEVAKELADSPESVREAVRLISKLTQEGLKQLKEIGAPPEQIERVAEHGLEVLKEIAKYGSKLTDSPELKRELYRIISETAKELLKILAEGGATPEQLERVTKHALEVLKEVAKELADSPESGLAALAAIASLAKLGLEQLKEIGAPPEQQRRVTKAGIEAVREIYRYGRKLY
O43_129_+4 component B K 418 Synthetic Construct MGDDLLLKLLELLVEQARVSAEFARRQGDEKMLEEVARKAEEVARKAEEIARKARKEGNLELALKALEILVRAAHVLAEIARERGNEELQKKAHKLAKEALRQVIEIAIRAIQEGNLELAIIALHISVRIAEVLLETRPDDREEIREQQAIFELLIAALEAAIRLEKLKEEGAPPEQIERVAEHGLERLKEIAKEISKEVDSPESKRIAYKIVAAAAEFLLKILAEGGATPEQLERVTEHALEVLKEVAKELADSPESVREAVRLISKLTQEGLKQLKEIGAPPEQIERVAEHGLEVLKEIAKYGSKLTDSPELKRELYRIISETAKELLKILAEGGATPEQLERVTKHALEVLKEVAKELADSPESGLAALAAIASLAKLGLEQLKEIGAPPEQQRRVTKAGIEAVREIYRYGRKLY
O43_129_+4 component B L 418 Synthetic Construct MGDDLLLKLLELLVEQARVSAEFARRQGDEKMLEEVARKAEEVARKAEEIARKARKEGNLELALKALEILVRAAHVLAEIARERGNEELQKKAHKLAKEALRQVIEIAIRAIQEGNLELAIIALHISVRIAEVLLETRPDDREEIREQQAIFELLIAALEAAIRLEKLKEEGAPPEQIERVAEHGLERLKEIAKEISKEVDSPESKRIAYKIVAAAAEFLLKILAEGGATPEQLERVTEHALEVLKEVAKELADSPESVREAVRLISKLTQEGLKQLKEIGAPPEQIERVAEHGLEVLKEIAKYGSKLTDSPELKRELYRIISETAKELLKILAEGGATPEQLERVTKHALEVLKEVAKELADSPESGLAALAAIASLAKLGLEQLKEIGAPPEQQRRVTKAGIEAVREIYRYGRKLY
O43_129_+4 component B M 418 Synthetic Construct MGDDLLLKLLELLVEQARVSAEFARRQGDEKMLEEVARKAEEVARKAEEIARKARKEGNLELALKALEILVRAAHVLAEIARERGNEELQKKAHKLAKEALRQVIEIAIRAIQEGNLELAIIALHISVRIAEVLLETRPDDREEIREQQAIFELLIAALEAAIRLEKLKEEGAPPEQIERVAEHGLERLKEIAKEISKEVDSPESKRIAYKIVAAAAEFLLKILAEGGATPEQLERVTEHALEVLKEVAKELADSPESVREAVRLISKLTQEGLKQLKEIGAPPEQIERVAEHGLEVLKEIAKYGSKLTDSPELKRELYRIISETAKELLKILAEGGATPEQLERVTKHALEVLKEVAKELADSPESGLAALAAIASLAKLGLEQLKEIGAPPEQQRRVTKAGIEAVREIYRYGRKLY
O43_129_+4 component B N 418 Synthetic Construct MGDDLLLKLLELLVEQARVSAEFARRQGDEKMLEEVARKAEEVARKAEEIARKARKEGNLELALKALEILVRAAHVLAEIARERGNEELQKKAHKLAKEALRQVIEIAIRAIQEGNLELAIIALHISVRIAEVLLETRPDDREEIREQQAIFELLIAALEAAIRLEKLKEEGAPPEQIERVAEHGLERLKEIAKEISKEVDSPESKRIAYKIVAAAAEFLLKILAEGGATPEQLERVTEHALEVLKEVAKELADSPESVREAVRLISKLTQEGLKQLKEIGAPPEQIERVAEHGLEVLKEIAKYGSKLTDSPELKRELYRIISETAKELLKILAEGGATPEQLERVTKHALEVLKEVAKELADSPESGLAALAAIASLAKLGLEQLKEIGAPPEQQRRVTKAGIEAVREIYRYGRKLY
O43_129_+4 component B O 418 Synthetic Construct MGDDLLLKLLELLVEQARVSAEFARRQGDEKMLEEVARKAEEVARKAEEIARKARKEGNLELALKALEILVRAAHVLAEIARERGNEELQKKAHKLAKEALRQVIEIAIRAIQEGNLELAIIALHISVRIAEVLLETRPDDREEIREQQAIFELLIAALEAAIRLEKLKEEGAPPEQIERVAEHGLERLKEIAKEISKEVDSPESKRIAYKIVAAAAEFLLKILAEGGATPEQLERVTEHALEVLKEVAKELADSPESVREAVRLISKLTQEGLKQLKEIGAPPEQIERVAEHGLEVLKEIAKYGSKLTDSPELKRELYRIISETAKELLKILAEGGATPEQLERVTKHALEVLKEVAKELADSPESGLAALAAIASLAKLGLEQLKEIGAPPEQQRRVTKAGIEAVREIYRYGRKLY
O43_129_+4 component B P 418 Synthetic Construct MGDDLLLKLLELLVEQARVSAEFARRQGDEKMLEEVARKAEEVARKAEEIARKARKEGNLELALKALEILVRAAHVLAEIARERGNEELQKKAHKLAKEALRQVIEIAIRAIQEGNLELAIIALHISVRIAEVLLETRPDDREEIREQQAIFELLIAALEAAIRLEKLKEEGAPPEQIERVAEHGLERLKEIAKEISKEVDSPESKRIAYKIVAAAAEFLLKILAEGGATPEQLERVTEHALEVLKEVAKELADSPESVREAVRLISKLTQEGLKQLKEIGAPPEQIERVAEHGLEVLKEIAKYGSKLTDSPELKRELYRIISETAKELLKILAEGGATPEQLERVTKHALEVLKEVAKELADSPESGLAALAAIASLAKLGLEQLKEIGAPPEQQRRVTKAGIEAVREIYRYGRKLY
O43_129_+4 component B Q 418 Synthetic Construct MGDDLLLKLLELLVEQARVSAEFARRQGDEKMLEEVARKAEEVARKAEEIARKARKEGNLELALKALEILVRAAHVLAEIARERGNEELQKKAHKLAKEALRQVIEIAIRAIQEGNLELAIIALHISVRIAEVLLETRPDDREEIREQQAIFELLIAALEAAIRLEKLKEEGAPPEQIERVAEHGLERLKEIAKEISKEVDSPESKRIAYKIVAAAAEFLLKILAEGGATPEQLERVTEHALEVLKEVAKELADSPESVREAVRLISKLTQEGLKQLKEIGAPPEQIERVAEHGLEVLKEIAKYGSKLTDSPELKRELYRIISETAKELLKILAEGGATPEQLERVTKHALEVLKEVAKELADSPESGLAALAAIASLAKLGLEQLKEIGAPPEQQRRVTKAGIEAVREIYRYGRKLY
O43_129_+4 component B R 418 Synthetic Construct MGDDLLLKLLELLVEQARVSAEFARRQGDEKMLEEVARKAEEVARKAEEIARKARKEGNLELALKALEILVRAAHVLAEIARERGNEELQKKAHKLAKEALRQVIEIAIRAIQEGNLELAIIALHISVRIAEVLLETRPDDREEIREQQAIFELLIAALEAAIRLEKLKEEGAPPEQIERVAEHGLERLKEIAKEISKEVDSPESKRIAYKIVAAAAEFLLKILAEGGATPEQLERVTEHALEVLKEVAKELADSPESVREAVRLISKLTQEGLKQLKEIGAPPEQIERVAEHGLEVLKEIAKYGSKLTDSPELKRELYRIISETAKELLKILAEGGATPEQLERVTKHALEVLKEVAKELADSPESGLAALAAIASLAKLGLEQLKEIGAPPEQQRRVTKAGIEAVREIYRYGRKLY
O43_129_+4 component B S 418 Synthetic Construct MGDDLLLKLLELLVEQARVSAEFARRQGDEKMLEEVARKAEEVARKAEEIARKARKEGNLELALKALEILVRAAHVLAEIARERGNEELQKKAHKLAKEALRQVIEIAIRAIQEGNLELAIIALHISVRIAEVLLETRPDDREEIREQQAIFELLIAALEAAIRLEKLKEEGAPPEQIERVAEHGLERLKEIAKEISKEVDSPESKRIAYKIVAAAAEFLLKILAEGGATPEQLERVTEHALEVLKEVAKELADSPESVREAVRLISKLTQEGLKQLKEIGAPPEQIERVAEHGLEVLKEIAKYGSKLTDSPELKRELYRIISETAKELLKILAEGGATPEQLERVTKHALEVLKEVAKELADSPESGLAALAAIASLAKLGLEQLKEIGAPPEQQRRVTKAGIEAVREIYRYGRKLY
O43_129_+4 component B T 418 Synthetic Construct MGDDLLLKLLELLVEQARVSAEFARRQGDEKMLEEVARKAEEVARKAEEIARKARKEGNLELALKALEILVRAAHVLAEIARERGNEELQKKAHKLAKEALRQVIEIAIRAIQEGNLELAIIALHISVRIAEVLLETRPDDREEIREQQAIFELLIAALEAAIRLEKLKEEGAPPEQIERVAEHGLERLKEIAKEISKEVDSPESKRIAYKIVAAAAEFLLKILAEGGATPEQLERVTEHALEVLKEVAKELADSPESVREAVRLISKLTQEGLKQLKEIGAPPEQIERVAEHGLEVLKEIAKYGSKLTDSPELKRELYRIISETAKELLKILAEGGATPEQLERVTKHALEVLKEVAKELADSPESGLAALAAIASLAKLGLEQLKEIGAPPEQQRRVTKAGIEAVREIYRYGRKLY
O43_129_+4 component B U 418 Synthetic Construct MGDDLLLKLLELLVEQARVSAEFARRQGDEKMLEEVARKAEEVARKAEEIARKARKEGNLELALKALEILVRAAHVLAEIARERGNEELQKKAHKLAKEALRQVIEIAIRAIQEGNLELAIIALHISVRIAEVLLETRPDDREEIREQQAIFELLIAALEAAIRLEKLKEEGAPPEQIERVAEHGLERLKEIAKEISKEVDSPESKRIAYKIVAAAAEFLLKILAEGGATPEQLERVTEHALEVLKEVAKELADSPESVREAVRLISKLTQEGLKQLKEIGAPPEQIERVAEHGLEVLKEIAKYGSKLTDSPELKRELYRIISETAKELLKILAEGGATPEQLERVTKHALEVLKEVAKELADSPESGLAALAAIASLAKLGLEQLKEIGAPPEQQRRVTKAGIEAVREIYRYGRKLY
O43_129_+4 component B V 418 Synthetic Construct MGDDLLLKLLELLVEQARVSAEFARRQGDEKMLEEVARKAEEVARKAEEIARKARKEGNLELALKALEILVRAAHVLAEIARERGNEELQKKAHKLAKEALRQVIEIAIRAIQEGNLELAIIALHISVRIAEVLLETRPDDREEIREQQAIFELLIAALEAAIRLEKLKEEGAPPEQIERVAEHGLERLKEIAKEISKEVDSPESKRIAYKIVAAAAEFLLKILAEGGATPEQLERVTEHALEVLKEVAKELADSPESVREAVRLISKLTQEGLKQLKEIGAPPEQIERVAEHGLEVLKEIAKYGSKLTDSPELKRELYRIISETAKELLKILAEGGATPEQLERVTKHALEVLKEVAKELADSPESGLAALAAIASLAKLGLEQLKEIGAPPEQQRRVTKAGIEAVREIYRYGRKLY
O43_129_+4 component B W 418 Synthetic Construct MGDDLLLKLLELLVEQARVSAEFARRQGDEKMLEEVARKAEEVARKAEEIARKARKEGNLELALKALEILVRAAHVLAEIARERGNEELQKKAHKLAKEALRQVIEIAIRAIQEGNLELAIIALHISVRIAEVLLETRPDDREEIREQQAIFELLIAALEAAIRLEKLKEEGAPPEQIERVAEHGLERLKEIAKEISKEVDSPESKRIAYKIVAAAAEFLLKILAEGGATPEQLERVTEHALEVLKEVAKELADSPESVREAVRLISKLTQEGLKQLKEIGAPPEQIERVAEHGLEVLKEIAKYGSKLTDSPELKRELYRIISETAKELLKILAEGGATPEQLERVTKHALEVLKEVAKELADSPESGLAALAAIASLAKLGLEQLKEIGAPPEQQRRVTKAGIEAVREIYRYGRKLY
O43_129_+4 component B X 418 Synthetic Construct MGDDLLLKLLELLVEQARVSAEFARRQGDEKMLEEVARKAEEVARKAEEIARKARKEGNLELALKALEILVRAAHVLAEIARERGNEELQKKAHKLAKEALRQVIEIAIRAIQEGNLELAIIALHISVRIAEVLLETRPDDREEIREQQAIFELLIAALEAAIRLEKLKEEGAPPEQIERVAEHGLERLKEIAKEISKEVDSPESKRIAYKIVAAAAEFLLKILAEGGATPEQLERVTEHALEVLKEVAKELADSPESVREAVRLISKLTQEGLKQLKEIGAPPEQIERVAEHGLEVLKEIAKYGSKLTDSPELKRELYRIISETAKELLKILAEGGATPEQLERVTKHALEVLKEVAKELADSPESGLAALAAIASLAKLGLEQLKEIGAPPEQQRRVTKAGIEAVREIYRYGRKLY
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-11-27
Deposition Author(s): Borst, A.J. , Carr, K.D. , Weidle, C.