Structure of heterochromatin protein 1 (hp1) alpha in complex with an h2a.z nucleosome
PDB DOI: 10.2210/pdb8uxq/pdb
Classification: STRUCTURAL PROTEIN Organism(s): Homo Sapiens , Mus Musculus , Xenopus Laevis , Synthetic Construct
Deposited: 2023-11-09 Deposition Author(s): Sokolova, V. , Tan, D.
Structure of heterochromatin protein 1 (hp1) alpha in complex with an h2a.z nucleosome
Primary Citation of Related Structures: 8UXQ
Proteins | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
Chromobox protein homolog 5 | A | 195 | Homo Sapiens , Mus Musculus , Xenopus Laevis , Synthetic Construct | GSPEFGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPEDAENKEKETAKS |
Chromobox protein homolog 5 | C | 195 | Homo Sapiens , Mus Musculus , Xenopus Laevis , Synthetic Construct | GSPEFGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPEDAENKEKETAKS |
Histone H3.2 | E | 135 | Homo Sapiens , Mus Musculus , Xenopus Laevis , Synthetic Construct | ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
Histone H3.2 | K | 135 | Homo Sapiens , Mus Musculus , Xenopus Laevis , Synthetic Construct | ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
Histone H4 | F | 102 | Homo Sapiens , Mus Musculus , Xenopus Laevis , Synthetic Construct | SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
Histone H4 | L | 102 | Homo Sapiens , Mus Musculus , Xenopus Laevis , Synthetic Construct | SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
Histone H2A.Z | G | 127 | Homo Sapiens , Mus Musculus , Xenopus Laevis , Synthetic Construct | AGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTV |
Histone H2A.Z | M | 127 | Homo Sapiens , Mus Musculus , Xenopus Laevis , Synthetic Construct | AGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTV |
Histone H2B 1.1 | H | 125 | Homo Sapiens , Mus Musculus , Xenopus Laevis , Synthetic Construct | PEPAKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK |
Histone H2B 1.1 | N | 125 | Homo Sapiens , Mus Musculus , Xenopus Laevis , Synthetic Construct | PEPAKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK |
Nucleic Acids / Hybrid | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
DNA Widom601 (208bp) strand1 | i | 208 | NA | ACTCCGGCAAGGTCGCTGTTCAATACATGCACAGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCCAGGGCGGCCGCGTATAGGGTCCATCACATAAGT |
DNA Widom601 (208bp) strand2 | j | 208 | NA | ACTTATGTGATGGACCCTATACGCGGCCGCCCTGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCTGTGCATGTATTGAACAGCGACCTTGCCGGAGT |
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-11-09 Deposition Author(s): Sokolova, V. , Tan, D.