Cryo-em structure of dnmt3a1 udr in complex with h2ak119ub-nucleosome
PDB DOI: 10.2210/pdb8uw1/pdb
Classification: GENE REGULATION Organism(s): Escherichia Coli 'Bl21-Gold(De3)Plyss Ag' , Xenopus Laevis , Synthetic Construct
Deposited: 2023-11-05 Deposition Author(s): Abini-Agbomson, S. , Armache, K.-J. , Gretarsson, K. , Lu, C.
Cryo-em structure of dnmt3a1 udr in complex with h2ak119ub-nucleosome
Abini-Agbomson, S. , Armache, K.-J. , Gretarsson, K. , Lu, C.
Primary Citation of Related Structures: 8UW1
Proteins | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
Histone H3.2 | A | 136 | Escherichia Coli 'Bl21-Gold(De3)Plyss Ag' , Xenopus Laevis , Synthetic Construct | MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
Histone H3.2 | E | 136 | Escherichia Coli 'Bl21-Gold(De3)Plyss Ag' , Xenopus Laevis , Synthetic Construct | MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
Histone H4 | B | 103 | Escherichia Coli 'Bl21-Gold(De3)Plyss Ag' , Xenopus Laevis , Synthetic Construct | MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
Histone H4 | F | 103 | Escherichia Coli 'Bl21-Gold(De3)Plyss Ag' , Xenopus Laevis , Synthetic Construct | MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
Histone H2A | C | 130 | Escherichia Coli 'Bl21-Gold(De3)Plyss Ag' , Xenopus Laevis , Synthetic Construct | MSGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSAKSK |
Histone H2A | G | 130 | Escherichia Coli 'Bl21-Gold(De3)Plyss Ag' , Xenopus Laevis , Synthetic Construct | MSGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSAKSK |
Histone H2B 1.1 | D | 126 | Escherichia Coli 'Bl21-Gold(De3)Plyss Ag' , Xenopus Laevis , Synthetic Construct | MPEPAKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK |
Histone H2B 1.1 | H | 126 | Escherichia Coli 'Bl21-Gold(De3)Plyss Ag' , Xenopus Laevis , Synthetic Construct | MPEPAKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK |
DNA (cytosine-5)-methyltransferase 3A | K | 76 | Escherichia Coli 'Bl21-Gold(De3)Plyss Ag' , Xenopus Laevis , Synthetic Construct | HHHHHHESMKMEGSRGRLRGGLGWESSLRQRPMPRLTFQAGDPYYISKRKRDEWLARWKREAEKKAKVIAGMNAVE |
Nucleic Acids / Hybrid | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
DNA (146-MER) | i | 146 | NA | TCGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGGATTCTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCGAT |
DNA (146-MER) | j | 146 | NA | ATCGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGAGAATCCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCGA |
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-11-05 Deposition Author(s): Abini-Agbomson, S. , Armache, K.-J. , Gretarsson, K. , Lu, C.