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8UW1

Cryo-em structure of dnmt3a1 udr in complex with h2ak119ub-nucleosome

PDB DOI: 10.2210/pdb8uw1/pdb

Classification: GENE REGULATION
Organism(s): Escherichia Coli 'Bl21-Gold(De3)Plyss Ag' , Xenopus Laevis , Synthetic Construct

Deposited: 2023-11-05
Deposition Author(s): Abini-Agbomson, S. , Armache, K.-J. , Gretarsson, K. , Lu, C.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.88 Å

8uw1
Literature

Cryo-em structure of dnmt3a1 udr in complex with h2ak119ub-nucleosome

Abini-Agbomson, S. , Armache, K.-J. , Gretarsson, K. , Lu, C.

Primary Citation of Related Structures: 8UW1


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.2 A 136 Escherichia Coli 'Bl21-Gold(De3)Plyss Ag' , Xenopus Laevis , Synthetic Construct MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.2 E 136 Escherichia Coli 'Bl21-Gold(De3)Plyss Ag' , Xenopus Laevis , Synthetic Construct MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 103 Escherichia Coli 'Bl21-Gold(De3)Plyss Ag' , Xenopus Laevis , Synthetic Construct MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 103 Escherichia Coli 'Bl21-Gold(De3)Plyss Ag' , Xenopus Laevis , Synthetic Construct MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A C 130 Escherichia Coli 'Bl21-Gold(De3)Plyss Ag' , Xenopus Laevis , Synthetic Construct MSGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSAKSK
Histone H2A G 130 Escherichia Coli 'Bl21-Gold(De3)Plyss Ag' , Xenopus Laevis , Synthetic Construct MSGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSAKSK
Histone H2B 1.1 D 126 Escherichia Coli 'Bl21-Gold(De3)Plyss Ag' , Xenopus Laevis , Synthetic Construct MPEPAKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H2B 1.1 H 126 Escherichia Coli 'Bl21-Gold(De3)Plyss Ag' , Xenopus Laevis , Synthetic Construct MPEPAKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
DNA (cytosine-5)-methyltransferase 3A K 76 Escherichia Coli 'Bl21-Gold(De3)Plyss Ag' , Xenopus Laevis , Synthetic Construct HHHHHHESMKMEGSRGRLRGGLGWESSLRQRPMPRLTFQAGDPYYISKRKRDEWLARWKREAEKKAKVIAGMNAVE

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (146-MER) i 146 NA TCGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGGATTCTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCGAT
DNA (146-MER) j 146 NA ATCGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGAGAATCCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCGA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-11-05
Deposition Author(s): Abini-Agbomson, S. , Armache, K.-J. , Gretarsson, K. , Lu, C.