8UUA
Cryo-em structure of the listeria innocua 50s ribosomal subunit in complex with hflxr (structure iii)
PDB DOI: 10.2210/pdb8uua/pdb
Classification: RIBOSOME Organism(s): Hahella , Mycobacterium Fortuitum Subsp. Fortuitum Dsm 46621 = Atcc 6841
Deposited: 2023-10-31 Deposition Author(s): Basu, R.S. , Gagnon, M.G. , Seely, S.M.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.7 Å
Cryo-em structure of the listeria innocua 50s ribosomal subunit in complex with hflxr (structure iii)
Basu, R.S. , Gagnon, M.G. , Seely, S.M.
Primary Citation of Related Structures: 8UUA
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Large ribosomal subunit protein uL23 | V | 94 | Hahella , Mycobacterium Fortuitum Subsp. Fortuitum Dsm 46621 = Atcc 6841 | MDARDIIKRPVVTEESTSILDDKKYTFEVDTRATKTQVKYAIEEIFDVKVAKVNVMNYKGKLKRMGRYAGYTNKRRKAIVTVTADSKEIQFFEV |
| Large ribosomal subunit protein uL14 | M | 122 | Hahella , Mycobacterium Fortuitum Subsp. Fortuitum Dsm 46621 = Atcc 6841 | MIQQESRMKVADNSGAREVLTIKVLGGSGRKTANIGDVVVCTVKQATPGGVVKKGEVVKAVIVRTKSGARRQDGSYIKFDENACVIIRDDKSPRGTRIFGPVARELRENNFMKIVSLAPEVL |
| Large ribosomal subunit protein uL15 | N | 146 | Hahella , Mycobacterium Fortuitum Subsp. Fortuitum Dsm 46621 = Atcc 6841 | MKLHELKPSEGSRKERNRVGRGTGSGNGKTSGRGHKGQKARSGGGVRLGFEGGQLPLFRRIPKRGFTNINRKEFAIVNLDVLNRFEDGTEVTPELLIETGIIRNEKSGIKILSDGNIEKKLTVKANKFSAAAKEAIEAAGGKTEVI |
| Large ribosomal subunit protein uL16 | O | 144 | Hahella , Mycobacterium Fortuitum Subsp. Fortuitum Dsm 46621 = Atcc 6841 | MLVPKRVKYRREFRGNMRGRAKGGTEVAFGEYGLQAVEASWITNRQIEAARIAMTRYMKRGGKVWIKIFPHKSYTSKPIGVRMGKGKGAPEGWVSPVKRGKIMFEIAGVPEDVAREALRLAAHKLPVKTKIVKREEIGGEANES |
| Large ribosomal subunit protein bL17 | P | 135 | Hahella , Mycobacterium Fortuitum Subsp. Fortuitum Dsm 46621 = Atcc 6841 | MGYRKLGRTSSQRKALLRDLATDLIVHERIETTEARAKEIRKVVEKLITSGKKGDLHARRQAAAFIRHEVVEVVQVDAKGKDGSTVKKNRPVYALQKLFDDVAPRYAERQGGYTRILKKGPRRGDGAPMVIIELV |
| Large ribosomal subunit protein uL18 | Q | 119 | Hahella , Mycobacterium Fortuitum Subsp. Fortuitum Dsm 46621 = Atcc 6841 | MITKIDKNKVRKKRHARVRSKISGTESRPRLNVFRSNKNIYAQVIDDVNGVTLASASNLDKDFGSAESKVDAASKVGELVAKRASEKGITSVTFDRGGYLYHGRVKALAEAARENGLEF |
| Large ribosomal subunit protein bL19 | R | 114 | Hahella , Mycobacterium Fortuitum Subsp. Fortuitum Dsm 46621 = Atcc 6841 | MNKLIDEITKSQLNPDVPSFRPGDTVRVHAKVVEGTRERIQLFEGVVIKRRGAGISETFTVRKISNGVGVERTFPVHTPRIAKLEVIRRGKVRRAKLYYLRNLRGKAARIKEIR |
| Large ribosomal subunit protein bL20 | S | 119 | Hahella , Mycobacterium Fortuitum Subsp. Fortuitum Dsm 46621 = Atcc 6841 | MPRVKGGTVTRKRRKKIVKLAKGYYGSKHLLFKVANQAVMKSYQYAYRDRRQKKRDFRRLWIARINAAARMQDLSYSKLMHGLKLAGIDINRKMLADLAVNDIASFNTLADSAKKALAK |
| Large ribosomal subunit protein bL21 | T | 102 | Hahella , Mycobacterium Fortuitum Subsp. Fortuitum Dsm 46621 = Atcc 6841 | MYAIIETGGKQIKVEAGQEIYVEKLAGEVGDVVTFDKVLFVGGDSAKVGVPFVDGATVTAKVEKQGRAKKLTVYKYKPKKNYHKKQGHRQPYTKLTIDAINA |
| Large ribosomal subunit protein uL22 | U | 118 | Hahella , Mycobacterium Fortuitum Subsp. Fortuitum Dsm 46621 = Atcc 6841 | MASEVTSAKAVAKTVRIAPRKARIVIDLIRGKQVGEAIAILKYTPRSASPIIEKVLKSAIANAEHNYDLDINNLVVEEAFVDEGPTLKRFRPRAQGRASAINKRTSHITVVVSEVKEG |
| Large ribosomal subunit protein uL24 | W | 103 | Hahella , Mycobacterium Fortuitum Subsp. Fortuitum Dsm 46621 = Atcc 6841 | MHVKKGDKVKVITGKDKGKSGKVLAAFPKKDRVLIEGINMVKKHTKPSNINPQGGILNVEAPIHVSNVMLIDPKTGEPTRVGYEVKGDKKVRVAKKSGEVIDK |
| Large ribosomal subunit protein bL27 | Y | 96 | Hahella , Mycobacterium Fortuitum Subsp. Fortuitum Dsm 46621 = Atcc 6841 | MLKFDIQHFAHKKGGGSTSNGRDSESKRLGAKRADGQFVTGGSILYRQRGTKIYPGTNVGRGGDDTLFAKTDGVVRFERMGRDKKKVSVYPEVQEA |
| Large ribosomal subunit protein bL28 | Z | 62 | Hahella , Mycobacterium Fortuitum Subsp. Fortuitum Dsm 46621 = Atcc 6841 | MAKECVITGRKSRSGNKRSHAMNSSKRTWKANLQKVRILVNGKPKKVWVSARALKSGKVERV |
| Large ribosomal subunit protein uL29 | 1 | 63 | Hahella , Mycobacterium Fortuitum Subsp. Fortuitum Dsm 46621 = Atcc 6841 | MKANDIRDLSTTEIQDQEKALKEELFNLRFQLATGQLENTARIREVRKAIARMKTIVRERELA |
| Large ribosomal subunit protein uL30 | 2 | 59 | Hahella , Mycobacterium Fortuitum Subsp. Fortuitum Dsm 46621 = Atcc 6841 | MAKLEITLKRSLIGRPQPQRKTVQALGLGKTNSVVVKEDNPAIRGMITKVSHLVDVKEV |
| Large ribosomal subunit protein bL31B | 3 | 81 | Hahella , Mycobacterium Fortuitum Subsp. Fortuitum Dsm 46621 = Atcc 6841 | MKTGIHPEYRPVVFVDTSTDFKFLSGSTKSSSETIKWEDGNEYPLLRVEISSDSHPFYTGKQKHATADGRVDRFNKKYGLK |
| Large ribosomal subunit protein bL32 | 4 | 57 | Hahella , Mycobacterium Fortuitum Subsp. Fortuitum Dsm 46621 = Atcc 6841 | MAVPFRRTSKAKKRKRRTHVKLQLPGMNECSNCGEYRLSHHVCPECGQYDGKDVANS |
| Large ribosomal subunit protein bL33 | 5 | 49 | Hahella , Mycobacterium Fortuitum Subsp. Fortuitum Dsm 46621 = Atcc 6841 | MRVNITLECTECGDRNYITTKNKRENPERIELKKYCPRLRRVTLHRETK |
| Large ribosomal subunit protein bL34 | 6 | 44 | Hahella , Mycobacterium Fortuitum Subsp. Fortuitum Dsm 46621 = Atcc 6841 | MKRTYQPSKRKRKKVHGFRTRMSTKNGRRVLASRRRKGRKVLSA |
| Large ribosomal subunit protein bL35 | 7 | 66 | Hahella , Mycobacterium Fortuitum Subsp. Fortuitum Dsm 46621 = Atcc 6841 | MPKMKTHRGSAKRFKRTGSGKLKRRHGFTSHMFANKSQKQKRKLRKSAMVSAGDFKRIRQMVAKMK |
| Large ribosomal subunit protein bL36 | 8 | 37 | Hahella , Mycobacterium Fortuitum Subsp. Fortuitum Dsm 46621 = Atcc 6841 | MKVRPSVKPMCEKCKVIRRKGKVMVICENPKHKQKQG |
| Large ribosomal subunit protein uL2 | C | 277 | Hahella , Mycobacterium Fortuitum Subsp. Fortuitum Dsm 46621 = Atcc 6841 | MAIKKYKPTTNGRRHMTSSDFAEITTSTPEKSLLRPLKKKAGRNNQGKLTVRHHGGGHKRQYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADGEKRYIIAAKGLEVGQTIYSGAEADIKVGNALELKDIPVGTVIHNIEMKPGKGGQLVRSAGTSAQVLGKEGKYVLIRLNSGEVRMILATCRATIGQVGNEQHELINIGKAGRSRWMGKRPTVRGSVMNPNDHPHGGGEGKAPIGRKSPMSPWGKPTLGYKTRKKNNNSDKFIVRRRKKK |
| Large ribosomal subunit protein uL3 | D | 209 | Hahella , Mycobacterium Fortuitum Subsp. Fortuitum Dsm 46621 = Atcc 6841 | MTKGILGRKVGMTQVFTENGELIPVTVIEAAQNVVLQKKTVETDGYEAVQIGFEDKRAKLSNKPEQGHVAKADTTPKRFIREFRDVNLDEYEIGAEVKVDVFAEGDIIDATGVSKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMGPVAPNRVFKNKLLPGRMGGEQITIQNLEIVKVDVEKNVLLVKGNVPGAKKALVQIKTATKAK |
| Large ribosomal subunit protein uL4 | E | 207 | Hahella , Mycobacterium Fortuitum Subsp. Fortuitum Dsm 46621 = Atcc 6841 | MPKLSLLKQDGTNAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVNEEKLVVLEGLTFDAPKTKEFAAFLKNISVDTKALIVVAGESENVELSARNLQGITVIPAESISVLEVAKHDKLIITKAAVEKVEEVLA |
| Large ribosomal subunit protein uL5 | F | 179 | Hahella , Mycobacterium Fortuitum Subsp. Fortuitum Dsm 46621 = Atcc 6841 | MNRLKDQYLKEIVPALMSKFNYDSVMEVPKIDKIVINTGVGDATANAKVLDSAVEELALITGQKPVITKAKNSIAGFRLREGMPIGAKVTLRGERMYDFLDKLVTVSLPRVRDFRGVSKKAFDGRGNYTLGVREQLIFPEIDYDQVSKVRGMDVVIVTTAKSDEESHELLTQLGMPFQK |
| Large ribosomal subunit protein uL6 | G | 178 | Hahella , Mycobacterium Fortuitum Subsp. Fortuitum Dsm 46621 = Atcc 6841 | MSRIGKKTIVIPAGVTVTLNGSTATVKGPKGELVKEFNPEITINIEGNEINVSRPTDNKNHRALHGTTRAILNNMVVGVSEGYEKKLELIGVGYRAQKQGDKLVLNVGYSHPVEFVAPKGVEIEVPANTQVIVKGYNKEHVGELAANIRAVRPPEPYKGKGIRYEGEHVRRKEGKTGK |
| Large ribosomal subunit protein uL13 | L | 145 | Hahella , Mycobacterium Fortuitum Subsp. Fortuitum Dsm 46621 = Atcc 6841 | MRTTYMAKPGEVERKWYVIDATGVSLGRLSSEVASILRGKNKPQFTPHIDTGDFVIIINAGKIGLTGKKATDKIYYRHSQYPGGLKSRTAGEMRTNNPEKLLELSIKGMLPKNSLGRQLFKKLHVYGGSEHEHAAQKPEVYELRG |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 23S Ribosomal RNA | a | 2932 | NA | GGUUAAGUUAGAAAGGGCGCACGGUGGAUGCCUUGGCACUAGGAGCCGAAGAAGGACGGGACUAACACCGAUAUGCUUUGGGGAGCUGUACGUAAGCGUUGAUCCAGAGAUUUCCGAAUGGGGGAACCCACUAUCUUUAGUCGGAUAGUAUCCUUACGUGAAUACAUAGCGUGAGGAAGGCAGACCCAGGGAACUGAAACAUCUAAGUACCUGGAGGAAGAGAAAGAAAAAUCGAUUUCCUGAGUAGCGGCGAGCGAAACGGAAAGAGCCCAAACCAAGAAGCUUGCUUCUUGGGGUUGUAGGACACUCUAUACGGAGUUACAAAAGAAAGUUAUAAAUGAAGCGGUCUGGAAAGGCCCGCCAAAGACGGUAACAGCCCGGUAGUUGAAAUGGCUUUCCCUCCAGAGUGGAUCCUGAGUACGACGGAACACGUGAAAUUCCGUCGGAAUCCGGGAGGACCAUCUCCCAAGGCUAAAUACUCCCUAGUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGUGAAAAGCACCCCGGAAGGGGAGUGAAACAGUUCCUGAAACCGUGUGCCUACAAGUAGUUAGAGCCCGUUAAUGGGUGAUAGCGUGCCUUUUGUAGAAUGAACCGGCGAGUUACGAUUUGUUGCAAGGUUAAGCGGAAAAAGCGGAGCCGUAGCGAAAGCGAGUCUGAAUAGGGCGCAUAAGUAACAGGUCGUAGACCCGAAACCAGGUGAUCUACCCAUGUCCAGGAUGAAGGUAAGGUAAUACUUACUGGAGGUCCGAACCCACGCACGUUGAAAAGUGCGGGGAUGAGGUGUGGGUAGCGGAGAAAUUCCAAUCGAACUUGGAGAUAGCUGGUUCUCUCCGAAAUAGCUUUAGGGCUAGCCUCGAGGUAAAGAGUCAUGGAGGUAGAGCACUGUUUGGACUAGGGGCCCUUCUCGGGUUACCGAAUUCAGAUAAACUCCGAAUGCCAUGUACUUAUACUCGGGAGUCAGACUGCGAGUGAUAAGAUCCGUAGUCGAAAGGGAAACAGCCCAGACCACCAGUUAAGGUCCCCAAAUAUAUGUUAAGUGGAAAAGGAUGUGGGGUUGCUUAGACAACCAGGAUGUUGGCUUAGAAGCAGCCACCAUUGAAAGAGUGCGUAAUAGCUCACUGGUCGAGUGACCCCGCGCCGAAAAUGUACCGGGGCUAAACAUAUUACCGAAACUGUGGAUGAACCUCUUCGGAGGUUCGUGGUAGGAGAGCGUUCUAAGGGCGGUGAAGUCAGACCGGAAGGACUGGUGGAGCGCUUAGAAGUGAGAAUGCCGGUAUGAGUAGCGAAAGAAGGGUGAGAAUCCCUUCCACCGAAUAUCUAAGGUUUCCUGAGGAAGGCUCGUCCGCUCAGGGUUAGUCGGGACCUAAGCCGAGGCCGAUAGGCGUAGGCGAUGGACAACAGGUAGAGAUUCCUGUACCAGUGCUAAUUGUUUAACCGAUGGGGUGACACAGAAGGAUAGGGAAUCGCACGAAUGGAAAUGUGCGUCCAAGCAGUGAGUGUGAGAAGUAGGCAAAUCCGCUUCUUGCGAAGCAUGAGCUGUGAUGGGGAAGGAAAUUAAGUACGGAAGUUCCUGAUUUCACGCUGUCAAGAAAAGCCUCUAGGAAGAGUAGUACUGCCCGUACCGCAAACCGACACAGGUAGAUGAGGAGAGAAUCCUAAGGUGAGCGAGAGAACUCUCGUUAAGGAACUCGGCAAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUCUAUUAGGGUGCAAGCCCGAGAGAGCCGCAGUGAAUAGGCCCAGGCGACUGUUUAGCAAAAACACAGGUCUCUGCAAAACCGUAAGGUGACGUAUAGGGGCUGACGCCUGCCCGGUGCUGGAAGGUUAAGAGGAGUGCUUAGCUUCGGCGAAGGUACGAAUUGAAGCCCCAGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCCGCACGAAAGGCGCAACGAUCUGGGCACUGUCUCAACGAGAGACUCGGUGAAAUUAUAGUACCUGUGAAGAUGCAGGUUACCCGCGACAGGACGGAAAGACCCCGUGGAGCUUUACUGCAACCUGAUAUGGAAUGUUUGUACCGCUUGUACAGGAUAGGUAGGAGCCGAAGAGACGUGUGCGCUAGCAUACGAGGAGGCAAUGGUGGGAUACUACCCUGGCUGUAUGACCAUUCUAACCCGCCACGCUAAGCGCGUGGGGAGACAGUGUCAGGUGGGCAGUUUGACUGGGGCGGUCGCCUCCUAAAGAGUAACGGAGGCGCCCAAAGGUUCCCUCAGAAUGGAUGGAAAUCAUUCGCAGAGUGUAAAGGCACAAGGGAGCUUGACUGCGAGACUGACAAGUCGAGCAGGGACGAAAGUCGGGCUUAGUGAUCCGGUGGUUCCGCAUGGAAGGGCCAUCGCUCAACGGAUAAAAGCUACCCCGGGGAUAACAGGCUUAUCUCCCCCAAGAGUCCACAUCGACGGGGAGGUUUGGCACCUCGAUGUCGGCUCGUCGCAUCCUGGGGCUGUAGUCGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGCACGCGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGUCCCUAUCCGUCGCGGGCGCAGGAAAUUUGAGAGGAGCUGUCCUUAGUACGAGAGGACCGGGAUGGACACACCGCUGGUGUACCAGUUGUUCCGCCAGGAGCAUCGCUGGGUAGCUAUGUGUGGCAGGGAUAAACGCUGAAAGCAUCUAAGCGUGAAGCCCCCCUCAAGAUGAGAUUUCCCAUUUCUUCGGAAAGUAAGAUCCCUGAAAGAUGAUCAGGUAGAUAGGUUUGGAGUGGAAGUGUAGCGAUACAUGGAGCGGACAAAUACUAAUCGAUCGAGGACUUAACCAA |
| 5S Ribosomal RNA | b | 116 | NA | UCUGGUAGUUAUGGCGAGAAGGUCACACCCGUUCCCAUCCCGAACACGGUAGUUAAGCUUCUCUGCGCCAAUGGUAGUUGGGGGCUUCCCCCUGCGAGAGUAGGUCGCUGCCGGGC |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-10-31 Deposition Author(s): Basu, R.S. , Gagnon, M.G. , Seely, S.M.