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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8URW

Cyanobacterial rna polymerase elongation complex with nusg and ctp

PDB DOI: 10.2210/pdb8urw/pdb

Classification: TRANSCRIPTION
Organism(s): Synechococcus Elongatus , Synthetic Construct

Deposited: 2023-10-26
Deposition Author(s): Bradley Riaz, A. , Imashimizu, M. , Leanca, M. , Murakami, K.S. , Qayyum, M.Z. , Vishwakarma, R.K. , Yuzenkova, Y.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.79 Å

Literature

Cyanobacterial rna polymerase elongation complex with nusg and ctp

Bradley Riaz, A. , Imashimizu, M. , Leanca, M. , Murakami, K.S. , Qayyum, M.Z. , Vishwakarma, R.K. , Yuzenkova, Y.

Primary Citation of Related Structures: 8URW


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA-directed RNA polymerase subunit alpha A 309 Synechococcus Elongatus , Synthetic Construct MTFQVECVESRTEADQGQYGRFSIEPLARGQGTTVGNALRRVLLSNLEGTAVTAVRIGGVNHEFATIPGVREDVLDILLNVRELVVHAHSPQPQIGRLRVVGPATVTAADVDFGPEVEVINPNHYIASLSEGATLEMELKVEWGTGYRAIDRSHDETTALDFLQLDAVFMPVRRVNYSVEDARVGESTAIDRLVLEVWTNGSLSPQEALSQAASCLVALFEPLKNVSVGSTHTADPEPTPESQTPIEDLQLSVRAYNCLKRAQVNSVADLLSYTYEDLLEIKNFGQKSAEEVVEALERIGIKLQESKVS
DNA-directed RNA polymerase subunit alpha B 309 Synechococcus Elongatus , Synthetic Construct MTFQVECVESRTEADQGQYGRFSIEPLARGQGTTVGNALRRVLLSNLEGTAVTAVRIGGVNHEFATIPGVREDVLDILLNVRELVVHAHSPQPQIGRLRVVGPATVTAADVDFGPEVEVINPNHYIASLSEGATLEMELKVEWGTGYRAIDRSHDETTALDFLQLDAVFMPVRRVNYSVEDARVGESTAIDRLVLEVWTNGSLSPQEALSQAASCLVALFEPLKNVSVGSTHTADPEPTPESQTPIEDLQLSVRAYNCLKRAQVNSVADLLSYTYEDLLEIKNFGQKSAEEVVEALERIGIKLQESKVS
DNA-directed RNA polymerase subunit beta C 1100 Synechococcus Elongatus , Synthetic Construct MAEQTQLAPAAFHLPDLVAIQRNSFRWFLEEGLIEELESFSPITDYTGKLELHFLGKQYKLKRPKYDVDEAKRRDGTYSVQMYVPTRLINKETGEIKEQEVFIGDLPLMTDRGTFIINGAERVIVNQIVRSPGVYYKSERDKNGRLTHNASLIPNRGAWLKFETDKNGLVWVRIDKTRKLSAQVLLKALGLSDNEIYDKLRHPEYYQKTIDKEGQFSEDEALMELYRKLRPGEPPTVSGGQQLLESRFFDPKRYDLGRVGRYKLNKKLGLNVADTVRTLTSEDILAAIDYLINLELDLGGCEVDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIRERMTVSDSDSLSPASLVNPKPLVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFAVRDIHPSHYGRICPIETPEGPNAGLIGSLATHARVNDYGFIETPFWRVEEGRVRKDLAPVYMTADQEDDLRVAPGDVATDDAGYILGTTIPVRYRQDFTTTTPERVDYVALSPVQIISVATSLIPFLEHDDANRALMGSNMQRQAVPLLRPERPLVGTGLEPQAARDSGMVITSPVDGTISYVDATHIEVTADTGEKYGYALQKYQRSNQDTCLNQRPIVFEGDRVQRGQVIADGSATEKGELALGQNILVAYMPWEGYNYEDAILISERLVYDDVYTSIHIEKFEIEARQTKLGPEEITREIPNVGEDALRQLDENGIIRVGAWVESGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRVPNGEKGRVVDVRLFTREQGDELPPGANMVVRVYVAQKRKIQVGDKMAGRHGNKGIISRILPCEDMPYLPDGTPLDIVLNPLGVPSRMNVGQVFECMLGWAGQLLDARFKVTPFDEMYGAEASRLTVNAKLSEAREQTGQPWVFSDDEPGKIQVYDGRTGEPFDRPVTVGRAYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAYGAAYILQELLTVKSDDMQGRNEALNAIVKGKAIPRPGTPESFKVLMRELQSLCLDIAVYKASTEDYEEDKEVDLMADVNQRRTPSRPTYESMSVGDIDDDDD
DNA-directed RNA polymerase subunit gamma D 624 Synechococcus Elongatus , Synthetic Construct MAKQEQRFDYVKIALASPERIRQWGERTLPNGQVVGEVTKPETINYRTLKPEMDGLFCEKIFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGFIKLAAPVAHVWYLKGIPSYIAILLDMPLRDVEQIVYFNSYVVLNPGNHSELQYKQLLNEDQWMEIEDQIYAEESDLEGIEVGIGAEALQQLLQDLNLNEESEKLRQEIAESKGQKRAKLIKRLRVIDNFIGTESRPEWMVLNVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVRNEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKIHQCGLPREMAIELFQPFVIHRLIKNHSINNIKQAKKLIQKNDPLIWDVLEEVIEGHPVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLSIEAQAEARMLMLASGNILSPATGQPIVTPSQDMVLGCYYLTAENPGAQKGAGRYFANLEDAIRAFEQGSVDLHAWVWVRFDGEVESEGESDEPESVVAADDGTVTKTYRFRRIRETEDGQRLSQYVKTTPGRILFNNTVQTALIH
DNA-directed RNA polymerase subunit omega E 76 Synechococcus Elongatus , Synthetic Construct MLQRFDLDSQDLLFKAESLIVNSTNRYHVTLQIARRAKQARYEEMENLSEETGIKPVLRAILEMSDELNQPEIIGG
DNA-directed RNA polymerase subunit beta' Z 1318 Synechococcus Elongatus , Synthetic Construct MAEAKSAPIFRNRVIDKKQLKKLIGWTFAHYGTAKTAVVADDLKALGFRYATRAGVSISIDDLKVPGSKAELLESAEKRIQETEDRYTRGEITEVERFQKVIDTWANTNDELTDRVVKNFRESDPLNSVYMMAFSGARGNISQVRQLVGMRGLMANPQGEIIDLPIKTNFREGLTVTEYIISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIIHEVDCGTSRGLFVEAMTDGDRILIPISQRLLGRVTAEAVLDPSTDEVLAEAGQDINEDLANRIEKAGIKKVKVRSPLTCEAARSVCQKCYGWSLAHAQMVDMGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGETARLLRAPVAGTIKLGKKARTRPYRTRHGEEALLAEANFDLVLEGKGRKETFAILQGSTIFVQDGDKVAAEAILAEVPVSGRTKRTVEKATKDVATDLAGEIRFQDIVPEEKTDRQGNTTRIAQRGGLLWVLAGDVYNLLPGAEPTVKNGDRVEVGDVLAETKLTTERGGTVRMGEDNGSSTHREVEIITASVVLDTATVKAEASQGREHYVIETKGGQRFNLLAAPGTKVTTGHVVAELIDSRYRTQTGGLLKYSGVEISKKGRAKAKQGYEVTKGGTLLWIPEETHEVNKDISLLNVEDGQLVEAGTEVVKDIFCQTTGIVSVTQNNDILREIVIKPGDVHVLDDPDTAAKYDEGRLVNAGEEVFPGLTAEQLVWAEAVDGTDGPLLLLRPVQELVIPDEPPVPSQDSSQESSSRSIRLRAVQRLQFQDGERIKSVEGVDLLRTQLVLESEEGSSQLSADIELLPDSKDPETLRLQLVIIEPVVIRRDVASDTTHGSTHTELRVKDGQKVKPGAVIACTQIQCKEAGVVRGIQEGSEAVRRLLVERERDCVTLDLDVTAATQLQPGSLIVAGTQLVDGIIAPESGEVRAIAPGQLQLRIARPYRVSQGAVLHVEDKGLVQRGDNLVLLVFERAKTGDIIQGLPRIEELLEARKPKEACILARRPGVAHINYSDDDAIDIQVIEADGTQADYPVGPGQPLIISDGETVDAGQALTDGPANPHDLLEIYYDYFREQLGEDYEAALESLRRVQALLVNEVQSVYQSQGIDISDKHIEVIVRQMTSKVRIDDGGDTIMLPGELHELREVYNSNNTMALTGMAPAQFTPVLLGITKASLNTNSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGFKAYEESLLTDVDGGYEDRVYDDDLADVVIDDRAARSYTLNEGRDFSRSMTFAEGESMILDDGEELIDDSSASLRNLVDVDED
Transcription termination/antitermination protein NusG G 205 Synechococcus Elongatus , Synthetic Construct MTDQYEEQLLSADDSVASEKARWYAVQVASGCEKRVKATLEQRVQTLDAANRILQVEIPETPIVKLKKDGSRQSAEEKVFPGYVLVRMILDDDAWQIVRNTPHVINFVGAEQKRPYGRGRGHVKPMPLSPGEVGRIFKRAQEQKPTVKIDLAEGDQILVLSGPFKDFEGTVIEVSPERSKLKALLSIFGRDTPVELEFNQVQKQN

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (40-MER) n 40 NA GGGCGCATGCTGCTCTAGGAGAGGTACACGGCGACTGCCC
DNA (40-MER) t 40 NA GGGCAGTCGCCGTGTACCTCTCCTAGAGCAGCATGCGCCC
RNA (5'-R(P*AP*AP*AP*GP*AP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') r 21 NA AGCAUUCAAAGAGGAGAGGUA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-10-26
Deposition Author(s): Bradley Riaz, A. , Imashimizu, M. , Leanca, M. , Murakami, K.S. , Qayyum, M.Z. , Vishwakarma, R.K. , Yuzenkova, Y.