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FASTA Sequence PDB Format mmCIF Format
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8ULS

Cryo-em structure of the bg505 sosipv2 in complex with bnab 01_d03 fabs

PDB DOI: 10.2210/pdb8uls/pdb

Classification: Viral Protein/Immune System
Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1

Deposited: 2023-10-16
Deposition Author(s): Bjorkman, P.J. , Delaitsch, A.T.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.2 Å

Literature

Cryo-em structure of the bg505 sosipv2 in complex with bnab 01_d03 fabs

Bjorkman, P.J. , Delaitsch, A.T.

Primary Citation of Related Structures: 8ULS


Proteins
Molecule Chains Sequence Length Organism Sequence
Envelope glycoprotein gp160 A 479 Homo Sapiens , Human Immunodeficiency Virus 1 NLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
Envelope glycoprotein gp160 C 479 Homo Sapiens , Human Immunodeficiency Virus 1 NLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
Envelope glycoprotein gp160 E 479 Homo Sapiens , Human Immunodeficiency Virus 1 NLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
BG505 DS-SOSIP glycoprotein gp41 B 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
BG505 DS-SOSIP glycoprotein gp41 D 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
BG505 DS-SOSIP glycoprotein gp41 F 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
01_D03 Fab Heavy Chain H 249 Homo Sapiens , Human Immunodeficiency Virus 1 HVQLWQSGAEVKKPGASVKISCSAWGFGTTSGYSFRDYRVHWVRHIAGQGFQWMGHMQPRYGAVNYARQFQGRITMTREVSFDASGGTAYMELRSLRSDDTAVYYCVTHKLYDGEDASDLTWRLDPWGQGTRVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHHHHHH
01_D03 Fab Heavy Chain I 249 Homo Sapiens , Human Immunodeficiency Virus 1 HVQLWQSGAEVKKPGASVKISCSAWGFGTTSGYSFRDYRVHWVRHIAGQGFQWMGHMQPRYGAVNYARQFQGRITMTREVSFDASGGTAYMELRSLRSDDTAVYYCVTHKLYDGEDASDLTWRLDPWGQGTRVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHHHHHH
01_D03 Fab Heavy Chain J 249 Homo Sapiens , Human Immunodeficiency Virus 1 HVQLWQSGAEVKKPGASVKISCSAWGFGTTSGYSFRDYRVHWVRHIAGQGFQWMGHMQPRYGAVNYARQFQGRITMTREVSFDASGGTAYMELRSLRSDDTAVYYCVTHKLYDGEDASDLTWRLDPWGQGTRVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHHHHHH
01_D03 Fab Light Chain L 211 Homo Sapiens , Human Immunodeficiency Virus 1 GVHLTQSPASLSASVGDRVTFTCQASQDITNAINWYQLRPGKTPKLMIHDGSTLRRGVPSRFAGSGFGTKFTFTIDNLQPEDLATYFCQHYEFFPPVGTQVELNRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
01_D03 Fab Light Chain M 211 Homo Sapiens , Human Immunodeficiency Virus 1 GVHLTQSPASLSASVGDRVTFTCQASQDITNAINWYQLRPGKTPKLMIHDGSTLRRGVPSRFAGSGFGTKFTFTIDNLQPEDLATYFCQHYEFFPPVGTQVELNRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
01_D03 Fab Light Chain N 211 Homo Sapiens , Human Immunodeficiency Virus 1 GVHLTQSPASLSASVGDRVTFTCQASQDITNAINWYQLRPGKTPKLMIHDGSTLRRGVPSRFAGSGFGTKFTFTIDNLQPEDLATYFCQHYEFFPPVGTQVELNRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-10-16
Deposition Author(s): Bjorkman, P.J. , Delaitsch, A.T.