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8UIW

Yjdf riboswitch from r. gauvreauii in complex with chelerythrine bound to fab bl3-6 s97n

PDB DOI: 10.2210/pdb8uiw/pdb

Classification: RNA
Organism(s): Enterobacter Aerogenes , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2023-10-10
Deposition Author(s): Krochmal, D. , Lewicka, A. , Piccirilli, J.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.77 Å

8uiw
Literature

Yjdf riboswitch from r. gauvreauii in complex with chelerythrine bound to fab bl3-6 s97n

Krochmal, D. , Lewicka, A. , Piccirilli, J.A.

Primary Citation of Related Structures: 8UIW


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
yjdF RNA (R. gauvreauii) n 128 NA GGACAAAGAUAAAAACACAACGUAUGGCGAAACACGUCAUACAGAUCCGGUAGGUAGUCCGGACAUAAACAGCGGUAUAAAGCGCUGUUUAUAAGUAACCUUCCUCCUUAGGUCGUCCAUUCUUUGUC
yjdF RNA (R. gauvreauii) r 128 NA GGACAAAGAUAAAAACACAACGUAUGGCGAAACACGUCAUACAGAUCCGGUAGGUAGUCCGGACAUAAACAGCGGUAUAAAGCGCUGUUUAUAAGUAACCUUCCUCCUUAGGUCGUCCAUUCUUUGUC

Proteins
Molecule Chains Sequence Length Organism Sequence
Fab BL3-6 S97N heavy chain A 233 Enterobacter Aerogenes , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) EISEVQLVESGGGLVQPGGSLRLSCAASGFYISYSSIHWVRQAPGKGLEWVASISPYSGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARQGYRRRSGRGFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT
Fab BL3-6 S97N heavy chain H 233 Enterobacter Aerogenes , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) EISEVQLVESGGGLVQPGGSLRLSCAASGFYISYSSIHWVRQAPGKGLEWVASISPYSGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARQGYRRRSGRGFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT
Fab BL3-6 S97N light chain B 215 Enterobacter Aerogenes , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYSFPNTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Fab BL3-6 S97N light chain L 215 Enterobacter Aerogenes , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYSFPNTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2023-10-10
Deposition Author(s): Krochmal, D. , Lewicka, A. , Piccirilli, J.A.