8UGQ
Cryoem structure of maize streak virus (msv) - geminivirus
PDB DOI: 10.2210/pdb8ugq/pdb
Classification: VIRAL PROTEIN Organism(s): Maize Streak Virus Genotype A (Isolate Nigeria)
Deposited: 2023-10-05 Deposition Author(s): Bennett, A.B. , Hull, J.A. , Mckenna, R. , Mietzsch, M.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.17 Å
Cryoem structure of maize streak virus (msv) - geminivirus
Bennett, A.B. , Hull, J.A. , Mckenna, R. , Mietzsch, M.
Primary Citation of Related Structures: 8UGQ
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Capsid protein | A | 243 | Maize Streak Virus Genotype A (Isolate Nigeria) | MSTSKRKRGDDSNWSKRVTKKKPSSAGLKRAGSKADRPSLQIQTLQHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNTGTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMETDGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAPGNGLTFTAHGQTRLYFKSVGN |
| Capsid protein | B | 243 | Maize Streak Virus Genotype A (Isolate Nigeria) | MSTSKRKRGDDSNWSKRVTKKKPSSAGLKRAGSKADRPSLQIQTLQHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNTGTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMETDGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAPGNGLTFTAHGQTRLYFKSVGN |
| Capsid protein | C | 243 | Maize Streak Virus Genotype A (Isolate Nigeria) | MSTSKRKRGDDSNWSKRVTKKKPSSAGLKRAGSKADRPSLQIQTLQHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNTGTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMETDGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAPGNGLTFTAHGQTRLYFKSVGN |
| Capsid protein | D | 243 | Maize Streak Virus Genotype A (Isolate Nigeria) | MSTSKRKRGDDSNWSKRVTKKKPSSAGLKRAGSKADRPSLQIQTLQHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNTGTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMETDGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAPGNGLTFTAHGQTRLYFKSVGN |
| Capsid protein | E | 243 | Maize Streak Virus Genotype A (Isolate Nigeria) | MSTSKRKRGDDSNWSKRVTKKKPSSAGLKRAGSKADRPSLQIQTLQHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNTGTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMETDGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAPGNGLTFTAHGQTRLYFKSVGN |
| Capsid protein | F | 243 | Maize Streak Virus Genotype A (Isolate Nigeria) | MSTSKRKRGDDSNWSKRVTKKKPSSAGLKRAGSKADRPSLQIQTLQHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNTGTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMETDGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAPGNGLTFTAHGQTRLYFKSVGN |
| Capsid protein | G | 243 | Maize Streak Virus Genotype A (Isolate Nigeria) | MSTSKRKRGDDSNWSKRVTKKKPSSAGLKRAGSKADRPSLQIQTLQHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNTGTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMETDGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAPGNGLTFTAHGQTRLYFKSVGN |
| Capsid protein | H | 243 | Maize Streak Virus Genotype A (Isolate Nigeria) | MSTSKRKRGDDSNWSKRVTKKKPSSAGLKRAGSKADRPSLQIQTLQHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNTGTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMETDGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAPGNGLTFTAHGQTRLYFKSVGN |
| Capsid protein | I | 243 | Maize Streak Virus Genotype A (Isolate Nigeria) | MSTSKRKRGDDSNWSKRVTKKKPSSAGLKRAGSKADRPSLQIQTLQHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNTGTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMETDGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAPGNGLTFTAHGQTRLYFKSVGN |
| Capsid protein | J | 243 | Maize Streak Virus Genotype A (Isolate Nigeria) | MSTSKRKRGDDSNWSKRVTKKKPSSAGLKRAGSKADRPSLQIQTLQHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNTGTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMETDGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAPGNGLTFTAHGQTRLYFKSVGN |
| Capsid protein | K | 243 | Maize Streak Virus Genotype A (Isolate Nigeria) | MSTSKRKRGDDSNWSKRVTKKKPSSAGLKRAGSKADRPSLQIQTLQHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNTGTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMETDGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAPGNGLTFTAHGQTRLYFKSVGN |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (5'-D(P*CP*GP*AP*AP*CP*CP*CP*CP*A)-3') | l | 9 | NA | CGAACCCCA |
| DNA (5'-D(P*CP*GP*AP*AP*CP*CP*CP*CP*A)-3') | m | 9 | NA | CGAACCCCA |
| DNA (5'-D(P*CP*GP*AP*AP*CP*CP*CP*CP*A)-3') | n | 9 | NA | CGAACCCCA |
| DNA (5'-D(P*CP*GP*AP*AP*CP*CP*CP*CP*A)-3') | o | 9 | NA | CGAACCCCA |
| DNA (5'-D(P*CP*GP*AP*AP*CP*CP*CP*CP*A)-3') | p | 9 | NA | CGAACCCCA |
| DNA (5'-D(P*CP*GP*AP*AP*CP*CP*CP*CP*A)-3') | q | 9 | NA | CGAACCCCA |
| DNA (5'-D(P*CP*GP*AP*AP*CP*CP*CP*CP*A)-3') | r | 9 | NA | CGAACCCCA |
| DNA (5'-D(P*CP*GP*AP*AP*CP*CP*CP*CP*A)-3') | s | 9 | NA | CGAACCCCA |
| DNA (5'-D(P*CP*GP*AP*AP*CP*CP*CP*CP*A)-3') | t | 9 | NA | CGAACCCCA |
| DNA (5'-D(P*CP*GP*AP*AP*CP*CP*CP*CP*A)-3') | u | 9 | NA | CGAACCCCA |
| DNA (5'-D(P*CP*GP*AP*AP*CP*CP*CP*CP*A)-3') | v | 9 | NA | CGAACCCCA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-10-05 Deposition Author(s): Bennett, A.B. , Hull, J.A. , Mckenna, R. , Mietzsch, M.