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FASTA Sequence PDB Format mmCIF Format
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8UBF

Diversity-generating retroelement (dgr) ribonucleoprotein - resting state 1c

PDB DOI: 10.2210/pdb8ubf/pdb

Classification: RNA BINDING PROTEIN/RNA
Organism(s): Bordetella Phage Bpp-1 , Synthetic Construct

Deposited: 2023-09-22
Deposition Author(s): Biswas, T. , Ghosh, P. , Handa, S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.61 Å

Literature

Diversity-generating retroelement (dgr) ribonucleoprotein - resting state 1c

Biswas, T. , Ghosh, P. , Handa, S.

Primary Citation of Related Structures: 8UBF


Proteins
Molecule Chains Sequence Length Organism Sequence
Reverse transcriptase A 328 Bordetella Phage Bpp-1 , Synthetic Construct MGKRHRNLIDQITTWENLLDAYRKTSHGKRRTWGYLEFKEYDLANLLALQAELKAGNYERGPYREFLVYEPKPRLISALEFKDRLVQHALCNIVAPIFEAGLLPYTYACRPDKGTHAGVCHVQAELRRTRATHFLKSDFSKFFPSIDRAALYAMIDKKIHCAATRRLLRVVLPDEGVGIPIGSLTSQLFANVYGGAVDRLLHDELKQRHWARYMDDIVVLGDDPEELRAVFYRLRDFASERLGLKISHWQVAPVSRGINFLGYRIWPTHKLLRKSSVKRAKRKVANFIKHGEDESLQRFLASWSGHAQWADTHNLFTWMEEQYGIACH
Avd B 290 Bordetella Phage Bpp-1 , Synthetic Construct MEPIEEATKCYDQMLIVERYERVISYLYPIAQSIPRKHGVAREMFLKCLLGQVELFIVAGKSNQVSKLYAADAGLAMLRFWLRFLAGIQKPHAMTPHQVETAQVLIAEVGRILGSWIARVNRKGTKVQVGEALVGDGNEVAHIDLIIGPRGSPAETAFCNGLVNNKHGFTSLLAVIAPNLPCKPNTLMFNKVTINDARQAVQMFGPAQHGVAMAVQDAVAEGIIPADEADDLYVLVGVFIHWEAADDAKIQKYNYEATKLSIQRAVNGEPKASVVTEQRKSATHPFAANA
Avd C 290 Bordetella Phage Bpp-1 , Synthetic Construct MEPIEEATKCYDQMLIVERYERVISYLYPIAQSIPRKHGVAREMFLKCLLGQVELFIVAGKSNQVSKLYAADAGLAMLRFWLRFLAGIQKPHAMTPHQVETAQVLIAEVGRILGSWIARVNRKGTKVQVGEALVGDGNEVAHIDLIIGPRGSPAETAFCNGLVNNKHGFTSLLAVIAPNLPCKPNTLMFNKVTINDARQAVQMFGPAQHGVAMAVQDAVAEGIIPADEADDLYVLVGVFIHWEAADDAKIQKYNYEATKLSIQRAVNGEPKASVVTEQRKSATHPFAANA
Avd D 290 Bordetella Phage Bpp-1 , Synthetic Construct MEPIEEATKCYDQMLIVERYERVISYLYPIAQSIPRKHGVAREMFLKCLLGQVELFIVAGKSNQVSKLYAADAGLAMLRFWLRFLAGIQKPHAMTPHQVETAQVLIAEVGRILGSWIARVNRKGTKVQVGEALVGDGNEVAHIDLIIGPRGSPAETAFCNGLVNNKHGFTSLLAVIAPNLPCKPNTLMFNKVTINDARQAVQMFGPAQHGVAMAVQDAVAEGIIPADEADDLYVLVGVFIHWEAADDAKIQKYNYEATKLSIQRAVNGEPKASVVTEQRKSATHPFAANA
Avd E 290 Bordetella Phage Bpp-1 , Synthetic Construct MEPIEEATKCYDQMLIVERYERVISYLYPIAQSIPRKHGVAREMFLKCLLGQVELFIVAGKSNQVSKLYAADAGLAMLRFWLRFLAGIQKPHAMTPHQVETAQVLIAEVGRILGSWIARVNRKGTKVQVGEALVGDGNEVAHIDLIIGPRGSPAETAFCNGLVNNKHGFTSLLAVIAPNLPCKPNTLMFNKVTINDARQAVQMFGPAQHGVAMAVQDAVAEGIIPADEADDLYVLVGVFIHWEAADDAKIQKYNYEATKLSIQRAVNGEPKASVVTEQRKSATHPFAANA
Avd F 290 Bordetella Phage Bpp-1 , Synthetic Construct MEPIEEATKCYDQMLIVERYERVISYLYPIAQSIPRKHGVAREMFLKCLLGQVELFIVAGKSNQVSKLYAADAGLAMLRFWLRFLAGIQKPHAMTPHQVETAQVLIAEVGRILGSWIARVNRKGTKVQVGEALVGDGNEVAHIDLIIGPRGSPAETAFCNGLVNNKHGFTSLLAVIAPNLPCKPNTLMFNKVTINDARQAVQMFGPAQHGVAMAVQDAVAEGIIPADEADDLYVLVGVFIHWEAADDAKIQKYNYEATKLSIQRAVNGEPKASVVTEQRKSATHPFAANA

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Diversity-generating retroelement (DGR) RNA TR h 36 NA CGCUGCUGCGCGGCGUCUAUGCCCAUCACCUUCUUG
Diversity-generating retroelement (DGR) RNA Sp i 140 NA CAUGGCUCUGCCAACGCUACGGCUUGGCGGGCUGGCCUUUCCUCAAUAGGUGGUCAGCCGGUUCUGUCCUGCUUCGGCGAACACGUUACACGGUUCGGCAAAACGUCGAUUACUGAAAAUGGAAAGGCGGGGCCGACUUC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-09-22
Deposition Author(s): Biswas, T. , Ghosh, P. , Handa, S.