8U29
Prefusion structure of the prd-0038 spike glycoprotein ectodomain trimer
PDB DOI: 10.2210/pdb8u29/pdb
Classification: VIRAL PROTEIN Organism(s): Sarbecovirus Sp.
Deposited: 2023-09-05 Deposition Author(s): Lee, J. , Park, Y.J. , Seattle Structural Genomics Center For Infectious Disease (Ssgcid) , Veesler, D.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.8 Å
Prefusion structure of the prd-0038 spike glycoprotein ectodomain trimer
Lee, J. , Park, Y.J. , Seattle Structural Genomics Center For Infectious Disease (Ssgcid) , Veesler, D.
Primary Citation of Related Structures: 8U29
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| PRD-0038 Spike glycoprotein | A | 1280 | Sarbecovirus Sp. | MGILPSPGMPALLSLVSLLSVLLMGCVAETGTQEGCGILSNKSKPALTQYSSSRRGFYYFDDTFRSSVRVLTTGYFLPFNSNLTGYSSRNAVTGRLIQFDNPNIPFKDGLYFAATERSNVIRGWIFGSTLDNTTQSAVLFNNGTHIVINVCNFYFCQDPMLTVANGSHYKSWVFLNATNCTYNRVHAFEIDPSLNTGAFIHLREHVFRNVDGFLYVYHNYERANVYDNFPSGFSVLKPILKLPFGLNITQFKVIMTLFSPTTSSFNADASVYFVGHLKPLTMLAEFDENGTITDAVDCSQDPLSELKCTTKSLTVEKGIYQTSNFRVSPSTEVVRFPNITNLCPFGQVFNASKFPSVYAWERLRISDCVADYSVLYNSSSSFSTFKCYGVSPTKLNDLCFSSVYADYFVVKGDDVRQIAPAQTGVIADYNYKLPDDFTGCVLAWNTNSVDSKQGNNFYYRLFRHGKIKPYERDISNVLYNSAGGTCSSTSQLGCYEPLKSYGFTPTVGVGYQPYRVVVLSFELLNAPATVCGPKKSTELVKNKCVNFNFNGLTGTGVLTSSTKKFQPFQQFGRDVSDFTDSVRDPKTLEILDISPCSYGGVSVITPGTNTSKAVAVLYQDVNCTDVPTMLHVEQVSTDWRVYALSADGNMFQTQAGCLVGATYENSTYECDIPIGAGICAKFGSNKLRLESIVAYTMSIGEDQSIAYSNNTIAIPTNFSISVTTEVLPVSMTKTSVDCNMYICGDSTECSNLLLQYGSFCTQLNRALSGIAVEQDRNTRDVFAQTKAIYKTPNIKDFGGFNFSQILPDPKKPSYRSPIEDLLYNKVTLSDPGFMKQYGDCLGGINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALISGTATAGYTFGAGAALQIPFPMQMAYRFNGIGVTQNVLYENQKQIANQFNNAISKIQDSLTTTPAALGKLQDVINQNAVALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQQQNFTTAPAICHNGKAYFPREGVFVMNGTHWFITQRNFYSPQVITTDNTFESGSCDVVIGIVNNTVYDPLQPELESFKQELDKYFKNHTSPDVDLGDISGINASVVDIKKEIAHLNEIAKNLNESLIDLQELGKYEQYVKSGRENLYFQGGGGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGHHHHHHHHGGSSGLNDIFEAQKIEWHE |
| PRD-0038 Spike glycoprotein | B | 1280 | Sarbecovirus Sp. | MGILPSPGMPALLSLVSLLSVLLMGCVAETGTQEGCGILSNKSKPALTQYSSSRRGFYYFDDTFRSSVRVLTTGYFLPFNSNLTGYSSRNAVTGRLIQFDNPNIPFKDGLYFAATERSNVIRGWIFGSTLDNTTQSAVLFNNGTHIVINVCNFYFCQDPMLTVANGSHYKSWVFLNATNCTYNRVHAFEIDPSLNTGAFIHLREHVFRNVDGFLYVYHNYERANVYDNFPSGFSVLKPILKLPFGLNITQFKVIMTLFSPTTSSFNADASVYFVGHLKPLTMLAEFDENGTITDAVDCSQDPLSELKCTTKSLTVEKGIYQTSNFRVSPSTEVVRFPNITNLCPFGQVFNASKFPSVYAWERLRISDCVADYSVLYNSSSSFSTFKCYGVSPTKLNDLCFSSVYADYFVVKGDDVRQIAPAQTGVIADYNYKLPDDFTGCVLAWNTNSVDSKQGNNFYYRLFRHGKIKPYERDISNVLYNSAGGTCSSTSQLGCYEPLKSYGFTPTVGVGYQPYRVVVLSFELLNAPATVCGPKKSTELVKNKCVNFNFNGLTGTGVLTSSTKKFQPFQQFGRDVSDFTDSVRDPKTLEILDISPCSYGGVSVITPGTNTSKAVAVLYQDVNCTDVPTMLHVEQVSTDWRVYALSADGNMFQTQAGCLVGATYENSTYECDIPIGAGICAKFGSNKLRLESIVAYTMSIGEDQSIAYSNNTIAIPTNFSISVTTEVLPVSMTKTSVDCNMYICGDSTECSNLLLQYGSFCTQLNRALSGIAVEQDRNTRDVFAQTKAIYKTPNIKDFGGFNFSQILPDPKKPSYRSPIEDLLYNKVTLSDPGFMKQYGDCLGGINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALISGTATAGYTFGAGAALQIPFPMQMAYRFNGIGVTQNVLYENQKQIANQFNNAISKIQDSLTTTPAALGKLQDVINQNAVALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQQQNFTTAPAICHNGKAYFPREGVFVMNGTHWFITQRNFYSPQVITTDNTFESGSCDVVIGIVNNTVYDPLQPELESFKQELDKYFKNHTSPDVDLGDISGINASVVDIKKEIAHLNEIAKNLNESLIDLQELGKYEQYVKSGRENLYFQGGGGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGHHHHHHHHGGSSGLNDIFEAQKIEWHE |
| PRD-0038 Spike glycoprotein | C | 1280 | Sarbecovirus Sp. | MGILPSPGMPALLSLVSLLSVLLMGCVAETGTQEGCGILSNKSKPALTQYSSSRRGFYYFDDTFRSSVRVLTTGYFLPFNSNLTGYSSRNAVTGRLIQFDNPNIPFKDGLYFAATERSNVIRGWIFGSTLDNTTQSAVLFNNGTHIVINVCNFYFCQDPMLTVANGSHYKSWVFLNATNCTYNRVHAFEIDPSLNTGAFIHLREHVFRNVDGFLYVYHNYERANVYDNFPSGFSVLKPILKLPFGLNITQFKVIMTLFSPTTSSFNADASVYFVGHLKPLTMLAEFDENGTITDAVDCSQDPLSELKCTTKSLTVEKGIYQTSNFRVSPSTEVVRFPNITNLCPFGQVFNASKFPSVYAWERLRISDCVADYSVLYNSSSSFSTFKCYGVSPTKLNDLCFSSVYADYFVVKGDDVRQIAPAQTGVIADYNYKLPDDFTGCVLAWNTNSVDSKQGNNFYYRLFRHGKIKPYERDISNVLYNSAGGTCSSTSQLGCYEPLKSYGFTPTVGVGYQPYRVVVLSFELLNAPATVCGPKKSTELVKNKCVNFNFNGLTGTGVLTSSTKKFQPFQQFGRDVSDFTDSVRDPKTLEILDISPCSYGGVSVITPGTNTSKAVAVLYQDVNCTDVPTMLHVEQVSTDWRVYALSADGNMFQTQAGCLVGATYENSTYECDIPIGAGICAKFGSNKLRLESIVAYTMSIGEDQSIAYSNNTIAIPTNFSISVTTEVLPVSMTKTSVDCNMYICGDSTECSNLLLQYGSFCTQLNRALSGIAVEQDRNTRDVFAQTKAIYKTPNIKDFGGFNFSQILPDPKKPSYRSPIEDLLYNKVTLSDPGFMKQYGDCLGGINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALISGTATAGYTFGAGAALQIPFPMQMAYRFNGIGVTQNVLYENQKQIANQFNNAISKIQDSLTTTPAALGKLQDVINQNAVALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQQQNFTTAPAICHNGKAYFPREGVFVMNGTHWFITQRNFYSPQVITTDNTFESGSCDVVIGIVNNTVYDPLQPELESFKQELDKYFKNHTSPDVDLGDISGINASVVDIKKEIAHLNEIAKNLNESLIDLQELGKYEQYVKSGRENLYFQGGGGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGHHHHHHHHGGSSGLNDIFEAQKIEWHE |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-09-05 Deposition Author(s): Lee, J. , Park, Y.J. , Seattle Structural Genomics Center For Infectious Disease (Ssgcid) , Veesler, D.