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FASTA Sequence PDB Format mmCIF Format
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8TR3

Cryo-em structure of hmab64 scfv in complex with cne40 sosip trimer

PDB DOI: 10.2210/pdb8tr3/pdb

Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Organism(s): Salmonella Enterica , Anoxybacillus Sp. Lm18-11

Deposited: 2023-08-09
Deposition Author(s): Chan, K.-W. , Kong, X.P.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.74 Å

8tr3
Literature

Cryo-em structure of hmab64 scfv in complex with cne40 sosip trimer

Chan, K.-W. , Kong, X.P.

Primary Citation of Related Structures: 8TR3


Proteins
Molecule Chains Sequence Length Organism Sequence
CNE40 SOSIP Envelope glycoprotein gp120 A 489 Salmonella Enterica , Anoxybacillus Sp. Lm18-11 GNLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPADPNPQEMLLKNVTENFNMWKNEMVNQMHEDVISLWDQSLKPCVKLTPLCVTLNCTNVKINSTSNETCIDSGNNSTCNETYKEMRNCSFNATTVVRDKQQKMYALFYKLDIVPLNSGYKNSSDETYRLINCNTSAITQACPKVSFDPIPIHYCTPAGYALLKCNNKTFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENLTNNAKTIIVHLKEPVNITCERPNNNTRKSIRIGPGQTFYATGDIIGNIREAHCNISRSQWNKTLQGVGEKLAELFPNKTIVFKNSSGGDLEITTHSFNCRGEFFYCNTTDLFNSTYWSNGTYITQSNSSSINITLPCRIKQIINMWQEVGRAIYAPPIAGQITCISNITGLLLLRDGGKEANGTEIFRPGGGDMRDNWRSELYKYKVVEIKPLGVAPTKCRRRVVERRRRRR
CNE40 SOSIP Envelope glycoprotein gp120 C 489 Salmonella Enterica , Anoxybacillus Sp. Lm18-11 GNLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPADPNPQEMLLKNVTENFNMWKNEMVNQMHEDVISLWDQSLKPCVKLTPLCVTLNCTNVKINSTSNETCIDSGNNSTCNETYKEMRNCSFNATTVVRDKQQKMYALFYKLDIVPLNSGYKNSSDETYRLINCNTSAITQACPKVSFDPIPIHYCTPAGYALLKCNNKTFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENLTNNAKTIIVHLKEPVNITCERPNNNTRKSIRIGPGQTFYATGDIIGNIREAHCNISRSQWNKTLQGVGEKLAELFPNKTIVFKNSSGGDLEITTHSFNCRGEFFYCNTTDLFNSTYWSNGTYITQSNSSSINITLPCRIKQIINMWQEVGRAIYAPPIAGQITCISNITGLLLLRDGGKEANGTEIFRPGGGDMRDNWRSELYKYKVVEIKPLGVAPTKCRRRVVERRRRRR
CNE40 SOSIP Envelope glycoprotein gp120 E 489 Salmonella Enterica , Anoxybacillus Sp. Lm18-11 GNLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPADPNPQEMLLKNVTENFNMWKNEMVNQMHEDVISLWDQSLKPCVKLTPLCVTLNCTNVKINSTSNETCIDSGNNSTCNETYKEMRNCSFNATTVVRDKQQKMYALFYKLDIVPLNSGYKNSSDETYRLINCNTSAITQACPKVSFDPIPIHYCTPAGYALLKCNNKTFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENLTNNAKTIIVHLKEPVNITCERPNNNTRKSIRIGPGQTFYATGDIIGNIREAHCNISRSQWNKTLQGVGEKLAELFPNKTIVFKNSSGGDLEITTHSFNCRGEFFYCNTTDLFNSTYWSNGTYITQSNSSSINITLPCRIKQIINMWQEVGRAIYAPPIAGQITCISNITGLLLLRDGGKEANGTEIFRPGGGDMRDNWRSELYKYKVVEIKPLGVAPTKCRRRVVERRRRRR
CNE40 SOSIP Transmembrane protein gp41 B 153 Salmonella Enterica , Anoxybacillus Sp. Lm18-11 AVGIGAVFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLKAPEAQQHLLQLTVWGIKQLQTRVLAIERYLKDQQLLGIWGCSGKLICCTAVPWNSSWSNKSQTEIWNNMTWMQWDREINNYTDIIYRLLEESQNQQENNEEDLLALD
CNE40 SOSIP Transmembrane protein gp41 D 153 Salmonella Enterica , Anoxybacillus Sp. Lm18-11 AVGIGAVFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLKAPEAQQHLLQLTVWGIKQLQTRVLAIERYLKDQQLLGIWGCSGKLICCTAVPWNSSWSNKSQTEIWNNMTWMQWDREINNYTDIIYRLLEESQNQQENNEEDLLALD
CNE40 SOSIP Transmembrane protein gp41 F 153 Salmonella Enterica , Anoxybacillus Sp. Lm18-11 AVGIGAVFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLKAPEAQQHLLQLTVWGIKQLQTRVLAIERYLKDQQLLGIWGCSGKLICCTAVPWNSSWSNKSQTEIWNNMTWMQWDREINNYTDIIYRLLEESQNQQENNEEDLLALD
HmAb64 Fv heavy chain H 124 Salmonella Enterica , Anoxybacillus Sp. Lm18-11 QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYDITWVRQAPGQGLEWMGWISAYNGDTNYAQRLQGRVTMTTDTSTSTAYMELRSLRSDDTAVYYCARAKHTVLVTAMRWFDPWGQGTLVTVSS
HmAb64 Fv heavy chain I 124 Salmonella Enterica , Anoxybacillus Sp. Lm18-11 QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYDITWVRQAPGQGLEWMGWISAYNGDTNYAQRLQGRVTMTTDTSTSTAYMELRSLRSDDTAVYYCARAKHTVLVTAMRWFDPWGQGTLVTVSS
HmAb64 Fv heavy chain J 124 Salmonella Enterica , Anoxybacillus Sp. Lm18-11 QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYDITWVRQAPGQGLEWMGWISAYNGDTNYAQRLQGRVTMTTDTSTSTAYMELRSLRSDDTAVYYCARAKHTVLVTAMRWFDPWGQGTLVTVSS
HmAb64 Fv light chain L 109 Salmonella Enterica , Anoxybacillus Sp. Lm18-11 DIQMTQSPSSLSASVGDRVTITCRASQSISNYLNWYQQKPGKAPKLLISATSSLQSGVPSRFSGSGSGTDFTLTISSLQPDDFATYYCQQSYSTPWTFGQGTKLEIKRT
HmAb64 Fv light chain M 109 Salmonella Enterica , Anoxybacillus Sp. Lm18-11 DIQMTQSPSSLSASVGDRVTITCRASQSISNYLNWYQQKPGKAPKLLISATSSLQSGVPSRFSGSGSGTDFTLTISSLQPDDFATYYCQQSYSTPWTFGQGTKLEIKRT
HmAb64 Fv light chain N 109 Salmonella Enterica , Anoxybacillus Sp. Lm18-11 DIQMTQSPSSLSASVGDRVTITCRASQSISNYLNWYQQKPGKAPKLLISATSSLQSGVPSRFSGSGSGTDFTLTISSLQPDDFATYYCQQSYSTPWTFGQGTKLEIKRT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-08-09
Deposition Author(s): Chan, K.-W. , Kong, X.P.