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FASTA Sequence PDB Format mmCIF Format
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8TQ4

Crystal structure of fab m142 in complex with mhc-i (h2-dd)

PDB DOI: 10.2210/pdb8tq4/pdb

Classification: IMMUNE SYSTEM
Organism(s): Mus Musculus , Rattus Norvegicus , Synthetic Construct

Deposited: 2023-08-06
Deposition Author(s): Boyd, L.F. , Jiang, J. , Margulies, D.H. , Natarajan, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.59 Å

8tq4
Literature

Crystal structure of fab m142 in complex with mhc-i (h2-dd)

Boyd, L.F. , Jiang, J. , Margulies, D.H. , Natarajan, K.

Primary Citation of Related Structures: 8TQ4


Proteins
Molecule Chains Sequence Length Organism Sequence
H2 class I histocompatibility antigen D-d alpha chain (H2-Dd) A 273 Mus Musculus , Rattus Norvegicus , Synthetic Construct SHSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARWIEQEGPEYWERETRRAKGNEQSFRVDLRTALRYYNQSAGGSHTLQWMAGCDVESDGRLLRGYWQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWEQAGAAERDRAYLEGECVEWLRRYLKNGNATLLRTDPPKAHVTHHRRPEGDVTLRCWALGFYPADITLTWQLNGEELTQEMELVETRPAGDGTFQKWASVVVPLGKEQKYTCHVEHEGLPEPLTLRW
H2 class I histocompatibility antigen D-d alpha chain (H2-Dd) E 273 Mus Musculus , Rattus Norvegicus , Synthetic Construct SHSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARWIEQEGPEYWERETRRAKGNEQSFRVDLRTALRYYNQSAGGSHTLQWMAGCDVESDGRLLRGYWQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWEQAGAAERDRAYLEGECVEWLRRYLKNGNATLLRTDPPKAHVTHHRRPEGDVTLRCWALGFYPADITLTWQLNGEELTQEMELVETRPAGDGTFQKWASVVVPLGKEQKYTCHVEHEGLPEPLTLRW
Beta-2-microglobulin B 98 Mus Musculus , Rattus Norvegicus , Synthetic Construct IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHASMAEPKTVYWDRD
Beta-2-microglobulin F 98 Mus Musculus , Rattus Norvegicus , Synthetic Construct IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHASMAEPKTVYWDRD
Fab M142 Heavy Chain C 222 Mus Musculus , Rattus Norvegicus , Synthetic Construct QVTLKESGPGMLQPSKTLSLTCSFSGFSLSTSGLVVNWIRQPSGKSLEWLAAIDWDGDEYYNPSPKSRLTVSKDTSNTQVFLKITSVDTVDTATYYCARSRRYGRYSGAFDYWGLGVMVTVSSAETTAPSVYPLAPGTALKSNSMVTLGCLVKGYFPEPVTVTWNSGALSSGVHTFPAVLQSGLYTLTSSVTVPSSTWSSQAVTCNVAHPASSTKVDKKIVP
Fab M142 Heavy Chain H 222 Mus Musculus , Rattus Norvegicus , Synthetic Construct QVTLKESGPGMLQPSKTLSLTCSFSGFSLSTSGLVVNWIRQPSGKSLEWLAAIDWDGDEYYNPSPKSRLTVSKDTSNTQVFLKITSVDTVDTATYYCARSRRYGRYSGAFDYWGLGVMVTVSSAETTAPSVYPLAPGTALKSNSMVTLGCLVKGYFPEPVTVTWNSGALSSGVHTFPAVLQSGLYTLTSSVTVPSSTWSSQAVTCNVAHPASSTKVDKKIVP
Fab M142 Light Chain D 213 Mus Musculus , Rattus Norvegicus , Synthetic Construct DIQMTQSPSSMSASLGDKVTINCLASEDIGNYLSWYQQRPGKSPKLMIYGVTNLEDGVPSRFSGSRSGSDYSLTINSLGYDDEGIYHCHEYYEYPFTFGSGTKLEIKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSPVVKSFNRNE
Fab M142 Light Chain L 213 Mus Musculus , Rattus Norvegicus , Synthetic Construct DIQMTQSPSSMSASLGDKVTINCLASEDIGNYLSWYQQRPGKSPKLMIYGVTNLEDGVPSRFSGSRSGSDYSLTINSLGYDDEGIYHCHEYYEYPFTFGSGTKLEIKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSPVVKSFNRNE
HV1: HIV-1 P18-I10 G 10 Mus Musculus , Rattus Norvegicus , Synthetic Construct RGPGRAFVTI
HV1: HIV-1 P18-I10 P 10 Mus Musculus , Rattus Norvegicus , Synthetic Construct RGPGRAFVTI
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2023-08-06
Deposition Author(s): Boyd, L.F. , Jiang, J. , Margulies, D.H. , Natarajan, K.