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8TOP
Cryo-em structure of hiv-1 env bg505 ds-sosip in complex with antibody gpz6-b.01 targeting the fusion peptide
PDB DOI: 10.2210/pdb8top/pdb
Classification: VIRAL PROTEIN/IMMUNE SYSTEM Organism(s): Human Immunodeficiency Virus 1 , Macaca Mulatta
Deposited: 2023-08-03 Deposition Author(s): Kwong, P.D. , Morano, N.C. , Roark, R.S. , Zhou, T.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.52 Å
Cryo-em structure of hiv-1 env bg505 ds-sosip in complex with antibody gpz6-b.01 targeting the fusion peptide
Kwong, P.D. , Morano, N.C. , Roark, R.S. , Zhou, T.
Primary Citation of Related Structures: 8TOP
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| HIV-1 BG505 DS-SOSIP gp120 | O | 481 | Human Immunodeficiency Virus 1 , Macaca Mulatta | AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR |
| HIV-1 BG505 DS-SOSIP gp120 | Q | 481 | Human Immunodeficiency Virus 1 , Macaca Mulatta | AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR |
| HIV-1 BG505 DS-SOSIP gp120 | S | 481 | Human Immunodeficiency Virus 1 , Macaca Mulatta | AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR |
| HIV-1 BG505 DS-SOSIP gp120 | A | 481 | Human Immunodeficiency Virus 1 , Macaca Mulatta | AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR |
| HIV-1 BG505 DS-SOSIP gp120 | C | 481 | Human Immunodeficiency Virus 1 , Macaca Mulatta | AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR |
| HIV-1 BG505 DS-SOSIP gp120 | E | 481 | Human Immunodeficiency Virus 1 , Macaca Mulatta | AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR |
| HIV-1 BG505 DS-SOSIP glycoprotein gp41 | P | 153 | Human Immunodeficiency Virus 1 , Macaca Mulatta | AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD |
| HIV-1 BG505 DS-SOSIP glycoprotein gp41 | R | 153 | Human Immunodeficiency Virus 1 , Macaca Mulatta | AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD |
| HIV-1 BG505 DS-SOSIP glycoprotein gp41 | T | 153 | Human Immunodeficiency Virus 1 , Macaca Mulatta | AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD |
| HIV-1 BG505 DS-SOSIP glycoprotein gp41 | B | 153 | Human Immunodeficiency Virus 1 , Macaca Mulatta | AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD |
| HIV-1 BG505 DS-SOSIP glycoprotein gp41 | D | 153 | Human Immunodeficiency Virus 1 , Macaca Mulatta | AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD |
| HIV-1 BG505 DS-SOSIP glycoprotein gp41 | F | 153 | Human Immunodeficiency Virus 1 , Macaca Mulatta | AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD |
| Heavy chain of antibody GPZ6-b.01 | H | 237 | Human Immunodeficiency Virus 1 , Macaca Mulatta | QVQLQESGPGLVKPSETLSLTCAVYGSSISGGYFYWHWIRQAPGKGLEWIGDVYFSGTTGYNPSLKRRVRISADTSKNQFSLNLRSVTAADTAVYFCARDPRGGGWVPNRFDVWGAGVLVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGGLEVLFQGP |
| Heavy chain of antibody GPZ6-b.01 | J | 237 | Human Immunodeficiency Virus 1 , Macaca Mulatta | QVQLQESGPGLVKPSETLSLTCAVYGSSISGGYFYWHWIRQAPGKGLEWIGDVYFSGTTGYNPSLKRRVRISADTSKNQFSLNLRSVTAADTAVYFCARDPRGGGWVPNRFDVWGAGVLVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGGLEVLFQGP |
| Heavy chain of antibody GPZ6-b.01 | M | 237 | Human Immunodeficiency Virus 1 , Macaca Mulatta | QVQLQESGPGLVKPSETLSLTCAVYGSSISGGYFYWHWIRQAPGKGLEWIGDVYFSGTTGYNPSLKRRVRISADTSKNQFSLNLRSVTAADTAVYFCARDPRGGGWVPNRFDVWGAGVLVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGGLEVLFQGP |
| Heavy chain of antibody GPZ6-b.01 | U | 237 | Human Immunodeficiency Virus 1 , Macaca Mulatta | QVQLQESGPGLVKPSETLSLTCAVYGSSISGGYFYWHWIRQAPGKGLEWIGDVYFSGTTGYNPSLKRRVRISADTSKNQFSLNLRSVTAADTAVYFCARDPRGGGWVPNRFDVWGAGVLVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGGLEVLFQGP |
| Heavy chain of antibody GPZ6-b.01 | W | 237 | Human Immunodeficiency Virus 1 , Macaca Mulatta | QVQLQESGPGLVKPSETLSLTCAVYGSSISGGYFYWHWIRQAPGKGLEWIGDVYFSGTTGYNPSLKRRVRISADTSKNQFSLNLRSVTAADTAVYFCARDPRGGGWVPNRFDVWGAGVLVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGGLEVLFQGP |
| Heavy chain of antibody GPZ6-b.01 | Y | 237 | Human Immunodeficiency Virus 1 , Macaca Mulatta | QVQLQESGPGLVKPSETLSLTCAVYGSSISGGYFYWHWIRQAPGKGLEWIGDVYFSGTTGYNPSLKRRVRISADTSKNQFSLNLRSVTAADTAVYFCARDPRGGGWVPNRFDVWGAGVLVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGGLEVLFQGP |
| Light chain of antibody GPZ6-b.01 | K | 214 | Human Immunodeficiency Virus 1 , Macaca Mulatta | DIQMTQSPSSLSASVGDRVTITCRASQDISSFLNWYQQKPGKAPKLLISSVNRLESGVPSRFSGSGSGTEFTLTVSSLQPEDFATYSCQQCGSVPYTFGQGTTLEIKRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGALKTGNSQESVTEQDSKDNTYSLSSTLTLSSTEYQSHKVYACEVTHQGLSSPVTKSFNRGEC |
| Light chain of antibody GPZ6-b.01 | L | 214 | Human Immunodeficiency Virus 1 , Macaca Mulatta | DIQMTQSPSSLSASVGDRVTITCRASQDISSFLNWYQQKPGKAPKLLISSVNRLESGVPSRFSGSGSGTEFTLTVSSLQPEDFATYSCQQCGSVPYTFGQGTTLEIKRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGALKTGNSQESVTEQDSKDNTYSLSSTLTLSSTEYQSHKVYACEVTHQGLSSPVTKSFNRGEC |
| Light chain of antibody GPZ6-b.01 | N | 214 | Human Immunodeficiency Virus 1 , Macaca Mulatta | DIQMTQSPSSLSASVGDRVTITCRASQDISSFLNWYQQKPGKAPKLLISSVNRLESGVPSRFSGSGSGTEFTLTVSSLQPEDFATYSCQQCGSVPYTFGQGTTLEIKRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGALKTGNSQESVTEQDSKDNTYSLSSTLTLSSTEYQSHKVYACEVTHQGLSSPVTKSFNRGEC |
| Light chain of antibody GPZ6-b.01 | V | 214 | Human Immunodeficiency Virus 1 , Macaca Mulatta | DIQMTQSPSSLSASVGDRVTITCRASQDISSFLNWYQQKPGKAPKLLISSVNRLESGVPSRFSGSGSGTEFTLTVSSLQPEDFATYSCQQCGSVPYTFGQGTTLEIKRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGALKTGNSQESVTEQDSKDNTYSLSSTLTLSSTEYQSHKVYACEVTHQGLSSPVTKSFNRGEC |
| Light chain of antibody GPZ6-b.01 | X | 214 | Human Immunodeficiency Virus 1 , Macaca Mulatta | DIQMTQSPSSLSASVGDRVTITCRASQDISSFLNWYQQKPGKAPKLLISSVNRLESGVPSRFSGSGSGTEFTLTVSSLQPEDFATYSCQQCGSVPYTFGQGTTLEIKRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGALKTGNSQESVTEQDSKDNTYSLSSTLTLSSTEYQSHKVYACEVTHQGLSSPVTKSFNRGEC |
| Light chain of antibody GPZ6-b.01 | Z | 214 | Human Immunodeficiency Virus 1 , Macaca Mulatta | DIQMTQSPSSLSASVGDRVTITCRASQDISSFLNWYQQKPGKAPKLLISSVNRLESGVPSRFSGSGSGTEFTLTVSSLQPEDFATYSCQQCGSVPYTFGQGTTLEIKRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGALKTGNSQESVTEQDSKDNTYSLSSTLTLSSTEYQSHKVYACEVTHQGLSSPVTKSFNRGEC |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-08-03 Deposition Author(s): Kwong, P.D. , Morano, N.C. , Roark, R.S. , Zhou, T.