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FASTA Sequence PDB Format mmCIF Format
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8TO7

Cryo-em structure of herh-b*01 fab in complex with hiv-1 env trimer bg505.ds sosip

PDB DOI: 10.2210/pdb8to7/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Human Immunodeficiency Virus 1 , Macaca Mulatta

Deposited: 2023-08-03
Deposition Author(s): Fischer, E. , Hansen, B. , Hoyt, F. , Kwong, P.D. , Roark, R.S. , Shapiro, L.S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.39 Å

8to7
Literature

Cryo-em structure of herh-b*01 fab in complex with hiv-1 env trimer bg505.ds sosip

Fischer, E. , Hansen, B. , Hoyt, F. , Kwong, P.D. , Roark, R.S. , Shapiro, L.S.

Primary Citation of Related Structures: 8TO7


Proteins
Molecule Chains Sequence Length Organism Sequence
Surface protein gp120 E 481 Human Immunodeficiency Virus 1 , Macaca Mulatta AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
Surface protein gp120 D 481 Human Immunodeficiency Virus 1 , Macaca Mulatta AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
Surface protein gp120 F 481 Human Immunodeficiency Virus 1 , Macaca Mulatta AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
Transmembrane protein gp41 B 153 Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
Transmembrane protein gp41 A 153 Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
Transmembrane protein gp41 C 153 Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
HERH-b*01 heavy chain H 238 Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLQESGPGLVKPSETLSLTCGVSGDSITRNYYYWHWIRQSPGKGLEGLGYIAYTGGTDYSPSFKSRVTISRDTSKNQFSLKLTSVTVADTAVYFCARERGDSYIYSYDGVDFWGQGLLVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGGLEVLFQGP
HERH-b*01 heavy chain G 238 Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLQESGPGLVKPSETLSLTCGVSGDSITRNYYYWHWIRQSPGKGLEGLGYIAYTGGTDYSPSFKSRVTISRDTSKNQFSLKLTSVTVADTAVYFCARERGDSYIYSYDGVDFWGQGLLVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGGLEVLFQGP
HERH-b*01 heavy chain I 238 Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLQESGPGLVKPSETLSLTCGVSGDSITRNYYYWHWIRQSPGKGLEGLGYIAYTGGTDYSPSFKSRVTISRDTSKNQFSLKLTSVTVADTAVYFCARERGDSYIYSYDGVDFWGQGLLVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGGLEVLFQGP
HERH-b*01 light chain L 219 Human Immunodeficiency Virus 1 , Macaca Mulatta DAVLTQSPLSLPITPGEPASISCRSSQSLLHTNGETYLNWYQQKTGQRPRLLISQVSKREIGVPDRFSASGAGSDFTLKISRVEAEDVGLYFCGQGLHWPRTFGQGTRVDIKRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGALKTGNSQESVTEQDSKDNTYSLSSTLTLSSTEYQSHKVYACEVTHQGLSSPVTKSFNRGEC
HERH-b*01 light chain J 219 Human Immunodeficiency Virus 1 , Macaca Mulatta DAVLTQSPLSLPITPGEPASISCRSSQSLLHTNGETYLNWYQQKTGQRPRLLISQVSKREIGVPDRFSASGAGSDFTLKISRVEAEDVGLYFCGQGLHWPRTFGQGTRVDIKRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGALKTGNSQESVTEQDSKDNTYSLSSTLTLSSTEYQSHKVYACEVTHQGLSSPVTKSFNRGEC
HERH-b*01 light chain K 219 Human Immunodeficiency Virus 1 , Macaca Mulatta DAVLTQSPLSLPITPGEPASISCRSSQSLLHTNGETYLNWYQQKTGQRPRLLISQVSKREIGVPDRFSASGAGSDFTLKISRVEAEDVGLYFCGQGLHWPRTFGQGTRVDIKRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGALKTGNSQESVTEQDSKDNTYSLSSTLTLSSTEYQSHKVYACEVTHQGLSSPVTKSFNRGEC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-08-03
Deposition Author(s): Fischer, E. , Hansen, B. , Hoyt, F. , Kwong, P.D. , Roark, R.S. , Shapiro, L.S.