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FASTA Sequence PDB Format mmCIF Format
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8TNH

Cryo-em structure of hiv-1 env bg505 ds-sosip in complex with broadly neutralizing llama nanobody g36 targeting the cd4-binding site

PDB DOI: 10.2210/pdb8tnh/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Human Immunodeficiency Virus 1 , Lama Glama

Deposited: 2023-08-01
Deposition Author(s): Kwong, P.D. , Xu, J. , Zhou, T.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.32 Å

8tnh
Literature

Cryo-em structure of hiv-1 env bg505 ds-sosip in complex with broadly neutralizing llama nanobody g36 targeting the cd4-binding site

Kwong, P.D. , Xu, J. , Zhou, T.

Primary Citation of Related Structures: 8TNH


Proteins
Molecule Chains Sequence Length Organism Sequence
HIV-1 BG505 DS-SOSIP gp120 A 481 Human Immunodeficiency Virus 1 , Lama Glama AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
HIV-1 BG505 DS-SOSIP gp120 C 481 Human Immunodeficiency Virus 1 , Lama Glama AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
HIV-1 BG505 DS-SOSIP gp120 E 481 Human Immunodeficiency Virus 1 , Lama Glama AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
HIV-1 BG505 DS-SOSIP gp41 B 153 Human Immunodeficiency Virus 1 , Lama Glama AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
HIV-1 BG505 DS-SOSIP gp41 D 153 Human Immunodeficiency Virus 1 , Lama Glama AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
HIV-1 BG505 DS-SOSIP gp41 F 153 Human Immunodeficiency Virus 1 , Lama Glama AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
CD4-binding site nanobody G36 H 125 Human Immunodeficiency Virus 1 , Lama Glama QVQLQESGGGSVQPGGSLRLSCAVSGLDVESVTIGWIRQAPGKEREEVGCISGNFDQTYYVDSVKGRFTISRVNEENTVYLQMDNLKPEDTATYYCVTDRQFYCALHRLPVSQYRGQGTQVTVSS
CD4-binding site nanobody G36 I 125 Human Immunodeficiency Virus 1 , Lama Glama QVQLQESGGGSVQPGGSLRLSCAVSGLDVESVTIGWIRQAPGKEREEVGCISGNFDQTYYVDSVKGRFTISRVNEENTVYLQMDNLKPEDTATYYCVTDRQFYCALHRLPVSQYRGQGTQVTVSS
CD4-binding site nanobody G36 J 125 Human Immunodeficiency Virus 1 , Lama Glama QVQLQESGGGSVQPGGSLRLSCAVSGLDVESVTIGWIRQAPGKEREEVGCISGNFDQTYYVDSVKGRFTISRVNEENTVYLQMDNLKPEDTATYYCVTDRQFYCALHRLPVSQYRGQGTQVTVSS
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-08-01
Deposition Author(s): Kwong, P.D. , Xu, J. , Zhou, T.