PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8TL5

Cryo-em structure of hiv-1 bg505ds-sosip.664 env trimer bound to herh-c.01 fab

PDB DOI: 10.2210/pdb8tl5/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1

Deposited: 2023-07-26
Deposition Author(s): Fischer, E. , Hoyt, F. , Kwong, P. , Pletnev, S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.3 Å

Literature

Cryo-em structure of hiv-1 bg505ds-sosip.664 env trimer bound to herh-c.01 fab

Fischer, E. , Hoyt, F. , Kwong, P. , Pletnev, S.

Primary Citation of Related Structures: 8TL5


Proteins
Molecule Chains Sequence Length Organism Sequence
BG505 DS-SOSIP Surface protein gp120 A 481 Homo Sapiens , Human Immunodeficiency Virus 1 AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
BG505 DS-SOSIP Surface protein gp120 C 481 Homo Sapiens , Human Immunodeficiency Virus 1 AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
BG505 DS-SOSIP Surface protein gp120 E 481 Homo Sapiens , Human Immunodeficiency Virus 1 AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
BG505 DS-SOSIP Transmembrane protein gp41 B 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
BG505 DS-SOSIP Transmembrane protein gp41 D 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
BG505 DS-SOSIP Transmembrane protein gp41 F 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
HERH-c.01 FAB HEAVY CHAIN G 237 Homo Sapiens , Human Immunodeficiency Virus 1 EVHLAESGGGLVQPGGSLRLSCAASGFMFSASEMHWVRQTPGKGLESVSVIGGSGTSTQYVDSVKGRFTVSRDNAKNALSLQMDSLRAEDTGVYYCARGGEVRSRGGWKNRVLDSWGQGVQVIVSPASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGGLEVLFQ
HERH-c.01 FAB HEAVY CHAIN I 237 Homo Sapiens , Human Immunodeficiency Virus 1 EVHLAESGGGLVQPGGSLRLSCAASGFMFSASEMHWVRQTPGKGLESVSVIGGSGTSTQYVDSVKGRFTVSRDNAKNALSLQMDSLRAEDTGVYYCARGGEVRSRGGWKNRVLDSWGQGVQVIVSPASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGGLEVLFQ
HERH-c.01 FAB HEAVY CHAIN K 237 Homo Sapiens , Human Immunodeficiency Virus 1 EVHLAESGGGLVQPGGSLRLSCAASGFMFSASEMHWVRQTPGKGLESVSVIGGSGTSTQYVDSVKGRFTVSRDNAKNALSLQMDSLRAEDTGVYYCARGGEVRSRGGWKNRVLDSWGQGVQVIVSPASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGGLEVLFQ
HERH-c.01 FAB LIGHT CHAIN H 214 Homo Sapiens , Human Immunodeficiency Virus 1 DIQMTQSPSSLSASVGDRVTITCQTSQPVNLWVAWYQQKPGKAPNLLIFGASTLQSGVPSRFSGSGAGTEFILTISNLQPEDFGTYFCQQHHNFPWTFGQGTKVDVKRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGALKTGNSQESVTEQDSKDNTYSLSSTLTLSSTEYQSHKVYACEVTHQGLSSPVTKSFNRGEC
HERH-c.01 FAB LIGHT CHAIN J 214 Homo Sapiens , Human Immunodeficiency Virus 1 DIQMTQSPSSLSASVGDRVTITCQTSQPVNLWVAWYQQKPGKAPNLLIFGASTLQSGVPSRFSGSGAGTEFILTISNLQPEDFGTYFCQQHHNFPWTFGQGTKVDVKRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGALKTGNSQESVTEQDSKDNTYSLSSTLTLSSTEYQSHKVYACEVTHQGLSSPVTKSFNRGEC
HERH-c.01 FAB LIGHT CHAIN L 214 Homo Sapiens , Human Immunodeficiency Virus 1 DIQMTQSPSSLSASVGDRVTITCQTSQPVNLWVAWYQQKPGKAPNLLIFGASTLQSGVPSRFSGSGAGTEFILTISNLQPEDFGTYFCQQHHNFPWTFGQGTKVDVKRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGALKTGNSQESVTEQDSKDNTYSLSSTLTLSSTEYQSHKVYACEVTHQGLSSPVTKSFNRGEC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-07-26
Deposition Author(s): Fischer, E. , Hoyt, F. , Kwong, P. , Pletnev, S.