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FASTA Sequence PDB Format mmCIF Format
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8TL3

Cryo-em structure of hiv-1 bg505ds-sosip.664 env trimer bound to dj85-d.01 fab

PDB DOI: 10.2210/pdb8tl3/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1

Deposited: 2023-07-26
Deposition Author(s): Fischer, E. , Hoyt, F. , Kwong, P. , Pletnev, S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

8tl3
Literature

Cryo-em structure of hiv-1 bg505ds-sosip.664 env trimer bound to dj85-d.01 fab

Fischer, E. , Hoyt, F. , Kwong, P. , Pletnev, S.

Primary Citation of Related Structures: 8TL3


Proteins
Molecule Chains Sequence Length Organism Sequence
BG505 DS-SOSIP glycoprotein gp120 A 481 Homo Sapiens , Human Immunodeficiency Virus 1 AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
BG505 DS-SOSIP glycoprotein gp120 C 481 Homo Sapiens , Human Immunodeficiency Virus 1 AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
BG505 DS-SOSIP glycoprotein gp120 E 481 Homo Sapiens , Human Immunodeficiency Virus 1 AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
BG505 DS-SOSIP glycoprotein gp41 B 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
BG505 DS-SOSIP glycoprotein gp41 D 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
BG505 DS-SOSIP glycoprotein gp41 F 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
DJ85-d.01 FAB HEAVY CHAIN G 237 Homo Sapiens , Human Immunodeficiency Virus 1 QVQLHESGPGLVKPSETLSLTCAVSGASISGNYYWNWIRQSPGRGLEWIGNIHGNGATTQYNPSLKSRVTISQDTSKNQVFLNLNSMTAADTAIYYCATQFRTYVGSHLFSYSDFWGQGVLVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGGLEVLFQ
DJ85-d.01 FAB HEAVY CHAIN I 237 Homo Sapiens , Human Immunodeficiency Virus 1 QVQLHESGPGLVKPSETLSLTCAVSGASISGNYYWNWIRQSPGRGLEWIGNIHGNGATTQYNPSLKSRVTISQDTSKNQVFLNLNSMTAADTAIYYCATQFRTYVGSHLFSYSDFWGQGVLVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGGLEVLFQ
DJ85-d.01 FAB HEAVY CHAIN K 237 Homo Sapiens , Human Immunodeficiency Virus 1 QVQLHESGPGLVKPSETLSLTCAVSGASISGNYYWNWIRQSPGRGLEWIGNIHGNGATTQYNPSLKSRVTISQDTSKNQVFLNLNSMTAADTAIYYCATQFRTYVGSHLFSYSDFWGQGVLVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGGLEVLFQ
DJ85-d.01 FAB LIGHT CHAIN H 214 Homo Sapiens , Human Immunodeficiency Virus 1 DIQMTQSPSSLSASVGDRVTMTCRASQDITTDLNWYQQKPGQPPKLLIYVASSLQNGVPSRFSGSGSGTEFTLTIRSLQPEDFATYYCLQYDSYPWTFGQGTTVDFRRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGALKTGNSQESVTEQDSKDNTYSLSSTLTLSSTEYQSHKVYACEVTHQGLSSPVTKSFNRGEC
DJ85-d.01 FAB LIGHT CHAIN J 214 Homo Sapiens , Human Immunodeficiency Virus 1 DIQMTQSPSSLSASVGDRVTMTCRASQDITTDLNWYQQKPGQPPKLLIYVASSLQNGVPSRFSGSGSGTEFTLTIRSLQPEDFATYYCLQYDSYPWTFGQGTTVDFRRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGALKTGNSQESVTEQDSKDNTYSLSSTLTLSSTEYQSHKVYACEVTHQGLSSPVTKSFNRGEC
DJ85-d.01 FAB LIGHT CHAIN L 214 Homo Sapiens , Human Immunodeficiency Virus 1 DIQMTQSPSSLSASVGDRVTMTCRASQDITTDLNWYQQKPGQPPKLLIYVASSLQNGVPSRFSGSGSGTEFTLTIRSLQPEDFATYYCLQYDSYPWTFGQGTTVDFRRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGALKTGNSQESVTEQDSKDNTYSLSSTLTLSSTEYQSHKVYACEVTHQGLSSPVTKSFNRGEC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-07-26
Deposition Author(s): Fischer, E. , Hoyt, F. , Kwong, P. , Pletnev, S.