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FASTA Sequence PDB Format mmCIF Format
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8TKC

Cryo-em structure of hiv-1 bg505ds-sosip.664 env trimer bound to dj85-b.01 fab

PDB DOI: 10.2210/pdb8tkc/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1

Deposited: 2023-07-25
Deposition Author(s): Fischer, E. , Hoyt, F. , Kwong, P. , Pletnev, S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

8tkc
Literature

Cryo-em structure of hiv-1 bg505ds-sosip.664 env trimer bound to dj85-b.01 fab

Fischer, E. , Hoyt, F. , Kwong, P. , Pletnev, S.

Primary Citation of Related Structures: 8TKC


Proteins
Molecule Chains Sequence Length Organism Sequence
BG505 DS-SOSIP Surface protein gp120 A 481 Homo Sapiens , Human Immunodeficiency Virus 1 AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
BG505 DS-SOSIP Surface protein gp120 C 481 Homo Sapiens , Human Immunodeficiency Virus 1 AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
BG505 DS-SOSIP Surface protein gp120 E 481 Homo Sapiens , Human Immunodeficiency Virus 1 AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
BG505 DS-SOSIP Transmembrane protein gp41 B 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
BG505 DS-SOSIP Transmembrane protein gp41 D 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
BG505 DS-SOSIP Transmembrane protein gp41 F 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
DJ85-b.01 FAB HEAVY CHAIN G 240 Homo Sapiens , Human Immunodeficiency Virus 1 QVQLQESGPGLVKASETLSLTCAVSGASVSGNYYWNWIRQSPGKELEWIGNIHGNSGTTTYNPSLESRVTISTDTSKNQFSLKLTSVTGADTATYFCATQFKKYWGLSVSSPFSFSDSWGQGVLVSVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGGLEVLFQ
DJ85-b.01 FAB HEAVY CHAIN I 240 Homo Sapiens , Human Immunodeficiency Virus 1 QVQLQESGPGLVKASETLSLTCAVSGASVSGNYYWNWIRQSPGKELEWIGNIHGNSGTTTYNPSLESRVTISTDTSKNQFSLKLTSVTGADTATYFCATQFKKYWGLSVSSPFSFSDSWGQGVLVSVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGGLEVLFQ
DJ85-b.01 FAB HEAVY CHAIN K 240 Homo Sapiens , Human Immunodeficiency Virus 1 QVQLQESGPGLVKASETLSLTCAVSGASVSGNYYWNWIRQSPGKELEWIGNIHGNSGTTTYNPSLESRVTISTDTSKNQFSLKLTSVTGADTATYFCATQFKKYWGLSVSSPFSFSDSWGQGVLVSVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGGLEVLFQ
DJ85-b.01 FAB LIGHT CHAIN H 214 Homo Sapiens , Human Immunodeficiency Virus 1 DIQMTQSPRSLSASVGDRVTITCRASQDISPDLNWYQQKPGGPLKLLIYDASNLQGGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCLQYNGYPWTFGQGTKVDHKRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGALKTGNSQESVTEQDSKDNTYSLSSTLTLSSTEYQSHKVYACEVTHQGLSSPVTKSFNRGEC
DJ85-b.01 FAB LIGHT CHAIN J 214 Homo Sapiens , Human Immunodeficiency Virus 1 DIQMTQSPRSLSASVGDRVTITCRASQDISPDLNWYQQKPGGPLKLLIYDASNLQGGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCLQYNGYPWTFGQGTKVDHKRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGALKTGNSQESVTEQDSKDNTYSLSSTLTLSSTEYQSHKVYACEVTHQGLSSPVTKSFNRGEC
DJ85-b.01 FAB LIGHT CHAIN L 214 Homo Sapiens , Human Immunodeficiency Virus 1 DIQMTQSPRSLSASVGDRVTITCRASQDISPDLNWYQQKPGGPLKLLIYDASNLQGGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCLQYNGYPWTFGQGTKVDHKRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGALKTGNSQESVTEQDSKDNTYSLSSTLTLSSTEYQSHKVYACEVTHQGLSSPVTKSFNRGEC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-07-25
Deposition Author(s): Fischer, E. , Hoyt, F. , Kwong, P. , Pletnev, S.