8TIX
Isoreticular, interpenetrating co-crystal of replication initiator protein repe54 and symmetrical expanded duplex (31mer) containing the cognate repe54 sequence and an additional g-c rich sequence with 1 sticky bases and 5' terminal phosphates and crosslinked with edc.
PDB DOI: 10.2210/pdb8tix/pdb
Classification: DNA BINDING PROTEIN/DNA Organism(s): Escherichia Coli K-12 , Synthetic Construct
Deposited: 2023-07-20 Deposition Author(s): Orun, A.R. , Shields, E.T. , Shrestha, R. , Slaughter, C.K. , Snow, C.D.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.91 Å
Isoreticular, interpenetrating co-crystal of replication initiator protein repe54 and symmetrical expanded duplex (31mer) containing the cognate repe54 sequence and an additional g-c rich sequence with 1 sticky bases and 5' terminal phosphates and crosslinked with edc.
Orun, A.R. , Shields, E.T. , Shrestha, R. , Slaughter, C.K. , Snow, C.D.
Primary Citation of Related Structures: 8TIX
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (5'-D(A*CP*CP*CP*GP*GP*AP*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*GP*AP*CP*GP*G)-3') | a | 32 | NA | ACCCGGACCTGTGACAAATTGCCCTCAGACGG |
| DNA (5'-D(A*GP*CP*CP*GP*TP*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*GP*TP*CP*CP*GP*G)-3') | b | 32 | NA | AGCCGTCTGAGGGCAATTTGTCACAGGTCCGG |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Replication initiation protein | C | 263 | Escherichia Coli K-12 , Synthetic Construct | MRGSHHHHHHGSMAETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKPAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMTTG |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2023-07-20 Deposition Author(s): Orun, A.R. , Shields, E.T. , Shrestha, R. , Slaughter, C.K. , Snow, C.D.