8T7R
Crystal structure of human leukocyte antigen a*0101 in complex with the fab of alloreactive antibody e07
PDB DOI: 10.2210/pdb8t7r/pdb
Classification: IMMUNE SYSTEM Organism(s): Homo Sapiens , Synthetic Construct
Deposited: 2023-06-21 Deposition Author(s): Green, T.J. , Killian Jr, J.T. , King, R.G. , Lund, F.E. , Macon, K.J. , Qiu, S. , Yang, G.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3.84 Å
Crystal structure of human leukocyte antigen a*0101 in complex with the fab of alloreactive antibody e07
Green, T.J. , Killian Jr, J.T. , King, R.G. , Lund, F.E. , Macon, K.J. , Qiu, S. , Yang, G.
Primary Citation of Related Structures: 8T7R
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| MHC class I antigen (Fragment) | A | 274 | Homo Sapiens , Synthetic Construct | GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQRRVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRW |
| MHC class I antigen (Fragment) | E | 274 | Homo Sapiens , Synthetic Construct | GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQRRVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRW |
| MHC class I antigen (Fragment) | I | 274 | Homo Sapiens , Synthetic Construct | GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQRRVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRW |
| Light chain from antibody JTK191b E07 | M | 214 | Homo Sapiens , Synthetic Construct | QSVSTQPPSVSVAPGQTARITCGGNNIGSKSVHWYRQKPGQAPVLVVYDNNARPSGIPERISGSNFANTATLTISRVEAGDEADYYCHVWDSSSDHVVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS |
| Light chain from antibody JTK191b E07 | Q | 214 | Homo Sapiens , Synthetic Construct | QSVSTQPPSVSVAPGQTARITCGGNNIGSKSVHWYRQKPGQAPVLVVYDNNARPSGIPERISGSNFANTATLTISRVEAGDEADYYCHVWDSSSDHVVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS |
| Light chain from antibody JTK191b E07 | U | 214 | Homo Sapiens , Synthetic Construct | QSVSTQPPSVSVAPGQTARITCGGNNIGSKSVHWYRQKPGQAPVLVVYDNNARPSGIPERISGSNFANTATLTISRVEAGDEADYYCHVWDSSSDHVVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS |
| Light chain from antibody JTK191b E07 | Y | 214 | Homo Sapiens , Synthetic Construct | QSVSTQPPSVSVAPGQTARITCGGNNIGSKSVHWYRQKPGQAPVLVVYDNNARPSGIPERISGSNFANTATLTISRVEAGDEADYYCHVWDSSSDHVVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS |
| MHC class I antigen (Fragment) | C | 274 | Homo Sapiens , Synthetic Construct | GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQRRVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRW |
| MHC class I antigen (Fragment) | G | 274 | Homo Sapiens , Synthetic Construct | GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQRRVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRW |
| MHC class I antigen (Fragment) | K | 274 | Homo Sapiens , Synthetic Construct | GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQRRVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRW |
| MHC class I antigen (Fragment) | O | 274 | Homo Sapiens , Synthetic Construct | GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQRRVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRW |
| MHC class I antigen (Fragment) | S | 274 | Homo Sapiens , Synthetic Construct | GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQRRVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRW |
| Beta-2-microglobulin | B | 99 | Homo Sapiens , Synthetic Construct | IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM |
| Beta-2-microglobulin | F | 99 | Homo Sapiens , Synthetic Construct | IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM |
| Fab heavy chain from antibody JTK191b E07 | J | 240 | Homo Sapiens , Synthetic Construct | QVQLQESGGGVVQPGGSLRLSCAASGFNFSNYGMHWVRQTPGKGLEWVASIPYDGSHQWHADSVKGRFTISRDNSKNTLYLQINSLRPEDTAMYYCSKARISYLSAPAWWFDPWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHTDYKDDDDK |
| Fab heavy chain from antibody JTK191b E07 | N | 240 | Homo Sapiens , Synthetic Construct | QVQLQESGGGVVQPGGSLRLSCAASGFNFSNYGMHWVRQTPGKGLEWVASIPYDGSHQWHADSVKGRFTISRDNSKNTLYLQINSLRPEDTAMYYCSKARISYLSAPAWWFDPWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHTDYKDDDDK |
| Fab heavy chain from antibody JTK191b E07 | R | 240 | Homo Sapiens , Synthetic Construct | QVQLQESGGGVVQPGGSLRLSCAASGFNFSNYGMHWVRQTPGKGLEWVASIPYDGSHQWHADSVKGRFTISRDNSKNTLYLQINSLRPEDTAMYYCSKARISYLSAPAWWFDPWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHTDYKDDDDK |
| Fab heavy chain from antibody JTK191b E07 | V | 240 | Homo Sapiens , Synthetic Construct | QVQLQESGGGVVQPGGSLRLSCAASGFNFSNYGMHWVRQTPGKGLEWVASIPYDGSHQWHADSVKGRFTISRDNSKNTLYLQINSLRPEDTAMYYCSKARISYLSAPAWWFDPWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHTDYKDDDDK |
| Fab heavy chain from antibody JTK191b E07 | Z | 240 | Homo Sapiens , Synthetic Construct | QVQLQESGGGVVQPGGSLRLSCAASGFNFSNYGMHWVRQTPGKGLEWVASIPYDGSHQWHADSVKGRFTISRDNSKNTLYLQINSLRPEDTAMYYCSKARISYLSAPAWWFDPWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHTDYKDDDDK |
| Beta-2-microglobulin | D | 99 | Homo Sapiens , Synthetic Construct | IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM |
| Beta-2-microglobulin | H | 99 | Homo Sapiens , Synthetic Construct | IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM |
| Beta-2-microglobulin | L | 99 | Homo Sapiens , Synthetic Construct | IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM |
| Beta-2-microglobulin | P | 99 | Homo Sapiens , Synthetic Construct | IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM |
| Beta-2-microglobulin | T | 99 | Homo Sapiens , Synthetic Construct | IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM |
| MHC class I antigen (Fragment) | W | 274 | Homo Sapiens , Synthetic Construct | GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQRRVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRW |
| peptide | 0 | 9 | Homo Sapiens , Synthetic Construct | VTEHDTLLY |
| peptide | 1 | 9 | Homo Sapiens , Synthetic Construct | VTEHDTLLY |
| peptide | 2 | 9 | Homo Sapiens , Synthetic Construct | VTEHDTLLY |
| peptide | 3 | 9 | Homo Sapiens , Synthetic Construct | VTEHDTLLY |
| peptide | 4 | 9 | Homo Sapiens , Synthetic Construct | VTEHDTLLY |
| peptide | 5 | 9 | Homo Sapiens , Synthetic Construct | VTEHDTLLY |
| peptide | 6 | 9 | Homo Sapiens , Synthetic Construct | VTEHDTLLY |
| peptide | 7 | 9 | Homo Sapiens , Synthetic Construct | VTEHDTLLY |
| peptide | 8 | 9 | Homo Sapiens , Synthetic Construct | VTEHDTLLY |
| Beta-2-microglobulin | X | 99 | Homo Sapiens , Synthetic Construct | IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2023-06-21 Deposition Author(s): Green, T.J. , Killian Jr, J.T. , King, R.G. , Lund, F.E. , Macon, K.J. , Qiu, S. , Yang, G.