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FASTA Sequence PDB Format mmCIF Format
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8SYI

Cyanobacterial rnap-ec

PDB DOI: 10.2210/pdb8syi/pdb

Classification: TRANSCRIPTION
Organism(s): Bacteriophage Lambda , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2023-05-25
Deposition Author(s): Bradley Riaz, A. , Imashimizu, M. , Leanca, M. , Murakami, K.S. , Qayyum, M.Z. , Vishwakarma, R.K. , Yuzenkova, Y.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.94 Å

8syi
Literature

Cyanobacterial rnap-ec

Bradley Riaz, A. , Imashimizu, M. , Leanca, M. , Murakami, K.S. , Qayyum, M.Z. , Vishwakarma, R.K. , Yuzenkova, Y.

Primary Citation of Related Structures: 8SYI


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA-directed RNA polymerase subunit alpha A 309 Bacteriophage Lambda , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MTFQVECVESRTEADQGQYGRFSIEPLARGQGTTVGNALRRVLLSNLEGTAVTAVRIGGVNHEFATIPGVREDVLDILLNVRELVVHAHSPQPQIGRLRVVGPATVTAADVDFGPEVEVINPNHYIASLSEGATLEMELKVEWGTGYRAIDRSHDETTALDFLQLDAVFMPVRRVNYSVEDARVGESTAIDRLVLEVWTNGSLSPQEALSQAASCLVALFEPLKNVSVGSTHTADPEPTPESQTPIEDLQLSVRAYNCLKRAQVNSVADLLSYTYEDLLEIKNFGQKSAEEVVEALERIGIKLQESKVS
DNA-directed RNA polymerase subunit alpha B 309 Bacteriophage Lambda , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MTFQVECVESRTEADQGQYGRFSIEPLARGQGTTVGNALRRVLLSNLEGTAVTAVRIGGVNHEFATIPGVREDVLDILLNVRELVVHAHSPQPQIGRLRVVGPATVTAADVDFGPEVEVINPNHYIASLSEGATLEMELKVEWGTGYRAIDRSHDETTALDFLQLDAVFMPVRRVNYSVEDARVGESTAIDRLVLEVWTNGSLSPQEALSQAASCLVALFEPLKNVSVGSTHTADPEPTPESQTPIEDLQLSVRAYNCLKRAQVNSVADLLSYTYEDLLEIKNFGQKSAEEVVEALERIGIKLQESKVS
DNA-directed RNA polymerase subunit beta C 1100 Bacteriophage Lambda , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MAEQTQLAPAAFHLPDLVAIQRNSFRWFLEEGLIEELESFSPITDYTGKLELHFLGKQYKLKRPKYDVDEAKRRDGTYSVQMYVPTRLINKETGEIKEQEVFIGDLPLMTDRGTFIINGAERVIVNQIVRSPGVYYKSERDKNGRLTHNASLIPNRGAWLKFETDKNGLVWVRIDKTRKLSAQVLLKALGLSDNEIYDKLRHPEYYQKTIDKEGQFSEDEALMELYRKLRPGEPPTVSGGQQLLESRFFDPKRYDLGRVGRYKLNKKLGLNVADTVRTLTSEDILAAIDYLINLELDLGGCEVDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIRERMTVSDSDSLSPASLVNPKPLVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFAVRDIHPSHYGRICPIETPEGPNAGLIGSLATHARVNDYGFIETPFWRVEEGRVRKDLAPVYMTADQEDDLRVAPGDVATDDAGYILGTTIPVRYRQDFTTTTPERVDYVALSPVQIISVATSLIPFLEHDDANRALMGSNMQRQAVPLLRPERPLVGTGLEPQAARDSGMVITSPVDGTISYVDATHIEVTADTGEKYGYALQKYQRSNQDTCLNQRPIVFEGDRVQRGQVIADGSATEKGELALGQNILVAYMPWEGYNYEDAILISERLVYDDVYTSIHIEKFEIEARQTKLGPEEITREIPNVGEDALRQLDENGIIRVGAWVESGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRVPNGEKGRVVDVRLFTREQGDELPPGANMVVRVYVAQKRKIQVGDKMAGRHGNKGIISRILPCEDMPYLPDGTPLDIVLNPLGVPSRMNVGQVFECMLGWAGQLLDARFKVTPFDEMYGAEASRLTVNAKLSEAREQTGQPWVFSDDEPGKIQVYDGRTGEPFDRPVTVGRAYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAYGAAYILQELLTVKSDDMQGRNEALNAIVKGKAIPRPGTPESFKVLMRELQSLCLDIAVYKASTEDYEEDKEVDLMADVNQRRTPSRPTYESMSVGDIDDDDD
DNA-directed RNA polymerase subunit gamma D 624 Bacteriophage Lambda , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MAKQEQRFDYVKIALASPERIRQWGERTLPNGQVVGEVTKPETINYRTLKPEMDGLFCEKIFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGFIKLAAPVAHVWYLKGIPSYIAILLDMPLRDVEQIVYFNSYVVLNPGNHSELQYKQLLNEDQWMEIEDQIYAEESDLEGIEVGIGAEALQQLLQDLNLNEESEKLRQEIAESKGQKRAKLIKRLRVIDNFIGTESRPEWMVLNVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVRNEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKIHQCGLPREMAIELFQPFVIHRLIKNHSINNIKQAKKLIQKNDPLIWDVLEEVIEGHPVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLSIEAQAEARMLMLASGNILSPATGQPIVTPSQDMVLGCYYLTAENPGAQKGAGRYFANLEDAIRAFEQGSVDLHAWVWVRFDGEVESEGESDEPESVVAADDGTVTKTYRFRRIRETEDGQRLSQYVKTTPGRILFNNTVQTALIH
DNA-directed RNA polymerase subunit beta' Z 1318 Bacteriophage Lambda , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MAEAKSAPIFRNRVIDKKQLKKLIGWTFAHYGTAKTAVVADDLKALGFRYATRAGVSISIDDLKVPGSKAELLESAEKRIQETEDRYTRGEITEVERFQKVIDTWANTNDELTDRVVKNFRESDPLNSVYMMAFSGARGNISQVRQLVGMRGLMANPQGEIIDLPIKTNFREGLTVTEYIISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIIHEVDCGTSRGLFVEAMTDGDRILIPISQRLLGRVTAEAVLDPSTDEVLAEAGQDINEDLANRIEKAGIKKVKVRSPLTCEAARSVCQKCYGWSLAHAQMVDMGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGETARLLRAPVAGTIKLGKKARTRPYRTRHGEEALLAEANFDLVLEGKGRKETFAILQGSTIFVQDGDKVAAEAILAEVPVSGRTKRTVEKATKDVATDLAGEIRFQDIVPEEKTDRQGNTTRIAQRGGLLWVLAGDVYNLLPGAEPTVKNGDRVEVGDVLAETKLTTERGGTVRMGEDNGSSTHREVEIITASVVLDTATVKAEASQGREHYVIETKGGQRFNLLAAPGTKVTTGHVVAELIDSRYRTQTGGLLKYSGVEISKKGRAKAKQGYEVTKGGTLLWIPEETHEVNKDISLLNVEDGQLVEAGTEVVKDIFCQTTGIVSVTQNNDILREIVIKPGDVHVLDDPDTAAKYDEGRLVNAGEEVFPGLTAEQLVWAEAVDGTDGPLLLLRPVQELVIPDEPPVPSQDSSQESSSRSIRLRAVQRLQFQDGERIKSVEGVDLLRTQLVLESEEGSSQLSADIELLPDSKDPETLRLQLVIIEPVVIRRDVASDTTHGSTHTELRVKDGQKVKPGAVIACTQIQCKEAGVVRGIQEGSEAVRRLLVERERDCVTLDLDVTAATQLQPGSLIVAGTQLVDGIIAPESGEVRAIAPGQLQLRIARPYRVSQGAVLHVEDKGLVQRGDNLVLLVFERAKTGDIIQGLPRIEELLEARKPKEACILARRPGVAHINYSDDDAIDIQVIEADGTQADYPVGPGQPLIISDGETVDAGQALTDGPANPHDLLEIYYDYFREQLGEDYEAALESLRRVQALLVNEVQSVYQSQGIDISDKHIEVIVRQMTSKVRIDDGGDTIMLPGELHELREVYNSNNTMALTGMAPAQFTPVLLGITKASLNTNSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGFKAYEESLLTDVDGGYEDRVYDDDLADVVIDDRAARSYTLNEGRDFSRSMTFAEGESMILDDGEELIDDSSASLRNLVDVDED
DNA-directed RNA polymerase subunit omega E 76 Bacteriophage Lambda , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MLQRFDLDSQDLLFKAESLIVNSTNRYHVTLQIARRAKQARYEEMENLSEETGIKPVLRAILEMSDELNQPEIIGG
Transcription termination/antitermination protein NusG G 205 Bacteriophage Lambda , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MTDQYEEQLLSADDSVASEKARWYAVQVASGCEKRVKATLEQRVQTLDAANRILQVEIPETPIVKLKKDGSRQSAEEKVFPGYVLVRMILDDDAWQIVRNTPHVINFVGAEQKRPYGRGRGHVKPMPLSPGEVGRIFKRAQEQKPTVKIDLAEGDQILVLSGPFKDFEGTVIEVSPERSKLKALLSIFGRDTPVELEFNQVQKQN

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (37-MER) n 40 NA GGGCGCATGCTGCTCTACCTCTCCATGACGGCGACTGCCC
RNA (5'-R(P*UP*UP*CP*AP*AP*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') r 20 NA GCAUUCAAAGCGGAGAGGUA
DNA (37-MER) t 40 NA GGGCAGTCGCCGTGTACCTCTCCTAGAGCAGCATGCGCCC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-05-25
Deposition Author(s): Bradley Riaz, A. , Imashimizu, M. , Leanca, M. , Murakami, K.S. , Qayyum, M.Z. , Vishwakarma, R.K. , Yuzenkova, Y.