Bg505 gt1.1 sosip in complex with nhp fabs 21n13, 21m20 and rm20a3
PDB DOI: 10.2210/pdb8sw4/pdb
Classification: VIRAL PROTEIN Organism(s): Human Immunodeficiency Virus 1 , Macaca
Deposited: 2023-05-17 Deposition Author(s): Ozorowski, G. , Torres, J.L. , Ward, A.B. , Zhang, S.
Bg505 gt1.1 sosip in complex with nhp fabs 21n13, 21m20 and rm20a3
Ozorowski, G. , Torres, J.L. , Ward, A.B. , Zhang, S.
Primary Citation of Related Structures: 8SW4
Proteins | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
21M20 heavy chain variable region | H | 125 | Human Immunodeficiency Virus 1 , Macaca | EVQLVESGGGLAKPGGSLRLSCAASGFTFSRSIMHWVRQAPGKGLEWVSTINYAGSTYYADSVRGRFVISRDNSKNTLSLQMNSVRPEDRAVYHCAKDKEGYYSGGYPLWYFDLWGPGTPVTISS |
21M20 light chain variable region | L | 107 | Human Immunodeficiency Virus 1 , Macaca | DVQMTQSPSSLSASVGDKVSITCRASQGIADALAWYQQKPGKAPKLLIYGASNLESGVPSRFSGSGSGTDFSLTISSLQAEDFAVYYCQQRNSHPPTFGQGTRVEVK |
BG505 GT1.1 SOSIP gp120 | A | 509 | Human Immunodeficiency Virus 1 , Macaca | MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARAENLWVTVYYGVPVWKDAETTLFCASDAKAYETKKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKRQKVHALFYKLDIVPINENQNTSYRLINCNTAAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSKDIRNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQWFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCDTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTDSTTETFRPSGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR |
BG505 GT1.1 SOSIP gp120 | C | 509 | Human Immunodeficiency Virus 1 , Macaca | MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARAENLWVTVYYGVPVWKDAETTLFCASDAKAYETKKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKRQKVHALFYKLDIVPINENQNTSYRLINCNTAAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSKDIRNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQWFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCDTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTDSTTETFRPSGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR |
BG505 GT1.1 SOSIP gp120 | D | 509 | Human Immunodeficiency Virus 1 , Macaca | MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARAENLWVTVYYGVPVWKDAETTLFCASDAKAYETKKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKRQKVHALFYKLDIVPINENQNTSYRLINCNTAAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSKDIRNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQWFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCDTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTDSTTETFRPSGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR |
Envelope glycoprotein gp41 | B | 153 | Human Immunodeficiency Virus 1 , Macaca | AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD |
Envelope glycoprotein gp41 | G | 153 | Human Immunodeficiency Virus 1 , Macaca | AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD |
Envelope glycoprotein gp41 | I | 153 | Human Immunodeficiency Virus 1 , Macaca | AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD |
RM20A3 heavy chain variable region | E | 124 | Human Immunodeficiency Virus 1 , Macaca | EVQLVETGGGLVQPGGSLKLSCRASGYTFSSFAMSWVRQAPGKGLEWVSLINDRGGLTFYVDSVKGRFTISRDNSKNTLSLQMHSLRDGDTAVYYCATGGMSSALQSSKYYFDFWGQGALVTVS |
RM20A3 heavy chain variable region | J | 124 | Human Immunodeficiency Virus 1 , Macaca | EVQLVETGGGLVQPGGSLKLSCRASGYTFSSFAMSWVRQAPGKGLEWVSLINDRGGLTFYVDSVKGRFTISRDNSKNTLSLQMHSLRDGDTAVYYCATGGMSSALQSSKYYFDFWGQGALVTVS |
RM20A3 heavy chain variable region | K | 124 | Human Immunodeficiency Virus 1 , Macaca | EVQLVETGGGLVQPGGSLKLSCRASGYTFSSFAMSWVRQAPGKGLEWVSLINDRGGLTFYVDSVKGRFTISRDNSKNTLSLQMHSLRDGDTAVYYCATGGMSSALQSSKYYFDFWGQGALVTVS |
RM20A3 light chain variable region | F | 111 | Human Immunodeficiency Virus 1 , Macaca | QSALTQPPSVSGSPGQSVTISCTGTSSDIGSYNYVSWYQQHPGKAPKLMIYDVTQRPSGVSDRFSGSKSGNTASLTISGLQADDEADYYCSAYAGRQTFYIFGGGTRLTVL |
RM20A3 light chain variable region | M | 111 | Human Immunodeficiency Virus 1 , Macaca | QSALTQPPSVSGSPGQSVTISCTGTSSDIGSYNYVSWYQQHPGKAPKLMIYDVTQRPSGVSDRFSGSKSGNTASLTISGLQADDEADYYCSAYAGRQTFYIFGGGTRLTVL |
RM20A3 light chain variable region | N | 111 | Human Immunodeficiency Virus 1 , Macaca | QSALTQPPSVSGSPGQSVTISCTGTSSDIGSYNYVSWYQQHPGKAPKLMIYDVTQRPSGVSDRFSGSKSGNTASLTISGLQADDEADYYCSAYAGRQTFYIFGGGTRLTVL |
21N13 heavy chain variable region | O | 130 | Human Immunodeficiency Virus 1 , Macaca | QVQLQESGPGRVKPSETLSLTCAVSDDSFGSSYFYWSWIRQAPGKGLEWIGYIAYSGGVRYNPSLSSRVTISRNIHERQFYLRLTSMTAADTAVYYCARHCEDDYGYYSAAQSYGLDSWGQGIAVTVSPS |
21N13 heavy chain variable region | Q | 130 | Human Immunodeficiency Virus 1 , Macaca | QVQLQESGPGRVKPSETLSLTCAVSDDSFGSSYFYWSWIRQAPGKGLEWIGYIAYSGGVRYNPSLSSRVTISRNIHERQFYLRLTSMTAADTAVYYCARHCEDDYGYYSAAQSYGLDSWGQGIAVTVSPS |
21N13 heavy chain variable region | S | 130 | Human Immunodeficiency Virus 1 , Macaca | QVQLQESGPGRVKPSETLSLTCAVSDDSFGSSYFYWSWIRQAPGKGLEWIGYIAYSGGVRYNPSLSSRVTISRNIHERQFYLRLTSMTAADTAVYYCARHCEDDYGYYSAAQSYGLDSWGQGIAVTVSPS |
21N13 light chain variable region | P | 107 | Human Immunodeficiency Virus 1 , Macaca | DIQMTQSPSSLSASVGDRVTITCRTSENVNNCLNWYQQKPGKAPKLLIYRTSTLQRGVPSRFSGTGSGTDYTLTISSLQSEDFGTYYCQHYYGTPLTFGGGTMVDIK |
21N13 light chain variable region | R | 107 | Human Immunodeficiency Virus 1 , Macaca | DIQMTQSPSSLSASVGDRVTITCRTSENVNNCLNWYQQKPGKAPKLLIYRTSTLQRGVPSRFSGTGSGTDYTLTISSLQSEDFGTYYCQHYYGTPLTFGGGTMVDIK |
21N13 light chain variable region | T | 107 | Human Immunodeficiency Virus 1 , Macaca | DIQMTQSPSSLSASVGDRVTITCRTSENVNNCLNWYQQKPGKAPKLLIYRTSTLQRGVPSRFSGTGSGTDYTLTISSLQSEDFGTYYCQHYYGTPLTFGGGTMVDIK |
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-05-17 Deposition Author(s): Ozorowski, G. , Torres, J.L. , Ward, A.B. , Zhang, S.