8SPU
Structure of esrrb nucleosome bound oct4 at site c
PDB DOI: 10.2210/pdb8spu/pdb
Classification: TRANSCRIPTION/DNA Organism(s): Escherichia Coli , Homo Sapiens , Synthetic Construct
Deposited: 2023-05-03 Deposition Author(s): Bai, Y. , Guan, R. , Lian, T.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.8 Å
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (168-MER) | j | 168 | NA | GCGTGCTGATTCCCTCCATTCGCTCTGCATAACTATCACTTTCTGGAACTCCATGGTCTCCTAGGTCGCCAGGCCTTTGCTTTGCAGCTTAGAACAGACTCTCTATGCTCCCTCCACCCTCTGTTTCTCCAGGTCCCACATGGGGAGGCGCTCCTTCTCCCTGCTGAT |
| DNA (168-MER) | i | 168 | NA | ATCAGCAGGGAGAAGGAGCGCCTCCCCATGTGGGACCTGGAGAAACAGAGGGTGGAGGGAGCATAGAGAGTCTGTTCTAAGCTGCAAAGCAAAGGCCTGGCGACCTAGGAGACCATGGAGTTCCAGAAAGTGATAGTTATGCAGAGCGAATGGAGGGAATCAGCACGC |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Maltodextrin-binding protein,POU domain, class 5, transcription factor 1 | L | 550 | Escherichia Coli , Homo Sapiens , Synthetic Construct | MKEAKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAGSENLYFQGSVDSAAASDIKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLVQARKRKRTSIENRVRGNLENLFLQCPKPTLQQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSEFHHHHHH |
| Histone H3.1 | E | 136 | Escherichia Coli , Homo Sapiens , Synthetic Construct | MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
| Histone H3.1 | A | 136 | Escherichia Coli , Homo Sapiens , Synthetic Construct | MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
| Histone H4 | F | 103 | Escherichia Coli , Homo Sapiens , Synthetic Construct | MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Histone H4 | B | 103 | Escherichia Coli , Homo Sapiens , Synthetic Construct | MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Histone H2A type 2-C | G | 129 | Escherichia Coli , Homo Sapiens , Synthetic Construct | MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHKAKSK |
| Histone H2A type 2-C | C | 129 | Escherichia Coli , Homo Sapiens , Synthetic Construct | MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHKAKSK |
| Histone H2B type 2-E | H | 126 | Escherichia Coli , Homo Sapiens , Synthetic Construct | MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK |
| Histone H2B type 2-E | D | 126 | Escherichia Coli , Homo Sapiens , Synthetic Construct | MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK |
| ScFv | N | 265 | Escherichia Coli , Homo Sapiens , Synthetic Construct | MKSSHHHHHHENLYFQSNAMEVQLQQSGPELVEPGTSVKMPCKASGYTFTSYTIQWVKQTPRQGLEWIGYIYPYNAGTKYNEKFKGKATLTSDKSSSTVYMELSSLTSEDSAVYYCARKSSRLRSTLDYWGQGTSVTVSSGGGGSGGGGSGGGGSMDIKMTQSPSSMHASLGERVTITCKASQDIRSYLSWYQQKPWKSPKTLIYYATSLADGVPSRFSGSGSGQDFSLTINNLESDDTATYYCLQHGESPYTFGSGTKLEIKRA |
| ScFv | K | 265 | Escherichia Coli , Homo Sapiens , Synthetic Construct | MKSSHHHHHHENLYFQSNAMEVQLQQSGPELVEPGTSVKMPCKASGYTFTSYTIQWVKQTPRQGLEWIGYIYPYNAGTKYNEKFKGKATLTSDKSSSTVYMELSSLTSEDSAVYYCARKSSRLRSTLDYWGQGTSVTVSSGGGGSGGGGSGGGGSMDIKMTQSPSSMHASLGERVTITCKASQDIRSYLSWYQQKPWKSPKTLIYYATSLADGVPSRFSGSGSGQDFSLTINNLESDDTATYYCLQHGESPYTFGSGTKLEIKRA |
Experimental Data
Method: ELECTRON MICROSCOPY