Cryo-em structure of the human nucleosome core particle in complex with rnf168 and ubch5c~ub (ubch5c chemically conjugated to histone h2a) (class 5)
PDB DOI: 10.2210/pdb8sn7/pdb
Classification: TRANSFERASE/DNA Organism(s): Homo Sapiens , Synthetic Construct
Deposited: 2023-04-26 Deposition Author(s): Botuyan, M.V. , Cui, G. , Hu, Q. , Mer, G. , Zhao, D.
Proteins | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
Histone H3.1 | A | 140 | Homo Sapiens , Synthetic Construct | GPGHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
Histone H3.1 | E | 140 | Homo Sapiens , Synthetic Construct | GPGHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
Histone H4 | B | 107 | Homo Sapiens , Synthetic Construct | GPGHMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
Histone H4 | F | 107 | Homo Sapiens , Synthetic Construct | GPGHMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
Histone H2A type 1-B/E | C | 119 | Homo Sapiens , Synthetic Construct | SAKACTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK |
Histone H2A type 1-B/E | G | 119 | Homo Sapiens , Synthetic Construct | SAKACTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK |
Histone H2B type 1-J | D | 128 | Homo Sapiens , Synthetic Construct | GPGHMPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS |
Histone H2B type 1-J | H | 128 | Homo Sapiens , Synthetic Construct | GPGHMPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS |
E3 ubiquitin-protein ligase RNF168 | K | 103 | Homo Sapiens , Synthetic Construct | MGHHHHHHGSMALPKDAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPRECKLRAS |
Ubiquitin-conjugating enzyme E2 D3 | L | 151 | Homo Sapiens , Synthetic Construct | GPGHMALKRINKELSDLARDPPAQISAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSIASLLDDPNPDDPKVPEIARIYKTDRDKYNRISREWTQKYAM |
Polyubiquitin-B | M | 81 | Homo Sapiens , Synthetic Construct | GPGHMMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG |
Nucleic Acids / Hybrid | ||||
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Molecule | Chains | Sequence Length | Organism | Sequence |
DNA (147-MER) | i | 147 | NA | ATCGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCGAT |
DNA (147-MER) | j | 147 | NA | ATCGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCGAT |
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-04-26 Deposition Author(s): Botuyan, M.V. , Cui, G. , Hu, Q. , Mer, G. , Zhao, D.