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FASTA Sequence PDB Format mmCIF Format
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8SN7

Cryo-em structure of the human nucleosome core particle in complex with rnf168 and ubch5c~ub (ubch5c chemically conjugated to histone h2a) (class 5)

PDB DOI: 10.2210/pdb8sn7/pdb

Classification: TRANSFERASE/DNA
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2023-04-26
Deposition Author(s): Botuyan, M.V. , Cui, G. , Hu, Q. , Mer, G. , Zhao, D.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.7 Å

8sn7
Literature

Cryo-em structure of the human nucleosome core particle in complex with rnf168 and ubch5c~ub (ubch5c chemically conjugated to histone h2a) (class 5)

Botuyan, M.V. , Cui, G. , Hu, Q. , Mer, G. , Zhao, D.

Primary Citation of Related Structures: 8SN7


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.1 A 140 Homo Sapiens , Synthetic Construct GPGHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.1 E 140 Homo Sapiens , Synthetic Construct GPGHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 107 Homo Sapiens , Synthetic Construct GPGHMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 107 Homo Sapiens , Synthetic Construct GPGHMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A type 1-B/E C 119 Homo Sapiens , Synthetic Construct SAKACTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Histone H2A type 1-B/E G 119 Homo Sapiens , Synthetic Construct SAKACTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Histone H2B type 1-J D 128 Homo Sapiens , Synthetic Construct GPGHMPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS
Histone H2B type 1-J H 128 Homo Sapiens , Synthetic Construct GPGHMPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS
E3 ubiquitin-protein ligase RNF168 K 103 Homo Sapiens , Synthetic Construct MGHHHHHHGSMALPKDAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPRECKLRAS
Ubiquitin-conjugating enzyme E2 D3 L 151 Homo Sapiens , Synthetic Construct GPGHMALKRINKELSDLARDPPAQISAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSIASLLDDPNPDDPKVPEIARIYKTDRDKYNRISREWTQKYAM
Polyubiquitin-B M 81 Homo Sapiens , Synthetic Construct GPGHMMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (147-MER) i 147 NA ATCGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCGAT
DNA (147-MER) j 147 NA ATCGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCGAT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-04-26
Deposition Author(s): Botuyan, M.V. , Cui, G. , Hu, Q. , Mer, G. , Zhao, D.