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FASTA Sequence PDB Format mmCIF Format
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8SFN

Wt crispr-cas12a with a 16bp r-loop and nontarget strand in the ruvc active site.

PDB DOI: 10.2210/pdb8sfn/pdb

Classification: DNA BINDING PROTEIN/DNA/RNA
Organism(s): Acidaminococcus Sp. Bv3L6 , Synthetic Construct

Deposited: 2023-04-11
Deposition Author(s): Strohkendl, I. , Taylor, D.W.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.3 Å

Literature

Wt crispr-cas12a with a 16bp r-loop and nontarget strand in the ruvc active site.

Strohkendl, I. , Taylor, D.W.

Primary Citation of Related Structures: 8SFN


Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR-associated endonuclease Cas12a A 1311 Acidaminococcus Sp. Bv3L6 , Synthetic Construct GAASMTQFEGFTNLYQVSKTLRFELIPQGKTLKHIQEQGFIEEDKARNDHYKELKPIIDRIYKTYADQCLQLVQLDWENLSAAIDSYRKEKTEETRNALIEEQATYRNAIHDYFIGRTDNLTDAINKRHAEIYKGLFKAELFNGKVLKQLGTVTTTEHENALLRSFDKFTTYFSGFYENRKNVFSAEDISTAIPHRIVQDNFPKFKENCHIFTRLITAVPSLREHFENVKKAIGIFVSTSIEEVFSFPFYNQLLTQTQIDLYNQLLGGISREAGTEKIKGLNEVLNLAIQKNDETAHIIASLPHRFIPLFKQILSDRNTLSFILEEFKSDEEVIQSFCKYKTLLRNENVLETAEALFNELNSIDLTHIFISHKKLETISSALCDHWDTLRNALYERRISELTGKITKSAKEKVQRSLKHEDINLQEIISAAGKELSEAFKQKTSEILSHAHAALDQPLPTTLKKQEEKEILKSQLDSLLGLYHLLDWFAVDESNEVDPEFSARLTGIKLEMEPSLSFYNKARNYATKKPYSVEKFKLNFQMPTLASGWDVNKEKNNGAILFVKNGLYYLGIMPKQKGRYKALSFEPTEKTSEGFDKMYYDYFPDAAKMIPKCSTQLKAVTAHFQTHTTPILLSNNFIEPLEITKEIYDLNNPEKEPKKFQTAYAKKTGDQKGYREALCKWIDFTRDFLSKYTKTTSIDLSSLRPSSQYKDLGEYYAELNPLLYHISFQRIAEKEIMDAVETGKLYLFQIYNKDFAKGHHGKPNLHTLYWTGLFSPENLAKTSIKLNGQAELFYRPKSRMKRMAHRLGEKMLNKKLKDQKTPIPDTLYQELYDYVNHRLSHDLSDEARALLPNVITKEVSHEIIKDRRFTSDKFFFHVPITLNYQAANSPSKFNQRVNAYLKEHPETPIIGIDRGERNLIYITVIDSTGKILEQRSLNTIQQFDYQKKLDNREKERVAARQAWSVVGTIKDLKQGYLSQVIHEIVDLMIHYQAVVVLENLNFGFKSKRTGIAEKAVYQQFEKMLIDKLNCLVLKDYPAEKVGGVLNPYQLTDQFTSFAKMGTQSGFLFYVPAPYTSKIDPLTGFVDPFVWKTIKNHESRKHFLEGFDFLHYDVKTGDFILHFKMNRNLSFQRGLPGFMPAWDIVFEKNETQFDAKGTPFIAGKRIVPVIENHRFTGRYRDLYPANELIALLEEKGIVFRDGSNILPKLLENDDSHAIDTMVALIRSVLQMRNSNAATGEDYINSPVRDLNGVCFDSRFQNPEWPMDADANGAYHIALKGQLLLNHLKESKDLKLQNGISNQDWLAYIQELRN

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (36-MER) b 48 NA UUUUUAAUUUCUACUCUUGUAGAUGUGAUAAGUGGAAUGCCAUGUGGA
DNA (31-MER) c 56 NA AGCACAGTAGCTACTCCAGTACGCATTCCACTTATCACTAAAAGATCGGAAGAGCG
DNA (30-MER) d 56 NA CGCTCTTCCGATCTTTTAGTGATAAGTGGAATGCGTACTGGAGTAGCTACTGTGCT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-04-11
Deposition Author(s): Strohkendl, I. , Taylor, D.W.