8S6M
Sars-cov-2 bq.1.1 rbd bound to the s2v29 and the s2h97 fab fragments
PDB DOI: 10.2210/pdb8s6m/pdb
Classification: VIRAL PROTEIN Organism(s): Salmonella Enterica , Gammaretrovirus
Deposited: 2024-02-28 Deposition Author(s): Cameroni, E. , Corti, D. , Czudnochowski, N. , Errico, J.M. , Marco, A.D. , Nix, J.C. , Park, Y.J. , Pinto, D. , Rietz, T. , Seattle Structural Genomics Center For Infectious Disease (Ssgcid) , Snell, G. , Veesler, D.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 1.67 Å
Sars-cov-2 bq.1.1 rbd bound to the s2v29 and the s2h97 fab fragments
Cameroni, E. , Corti, D. , Czudnochowski, N. , Errico, J.M. , Marco, A.D. , Nix, J.C. , Park, Y.J. , Pinto, D. , Rietz, T. , Seattle Structural Genomics Center For Infectious Disease (Ssgcid) , Snell, G. , Veesler, D.
Primary Citation of Related Structures: 8S6M
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| S2V29 Fab heavy chain | H | 226 | Salmonella Enterica , Gammaretrovirus | EVQLVESGGSVVQPGRALRLSCAASGITFSSFGMYWVRQAPGKGLEWLGVIAYDGSNTYYADSVKGRFTISRDNSKNTLYLQMNSLRIEDTAVYYCAKDYYPLLSYYYGLDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC |
| Spike protein S1 | R | 269 | Salmonella Enterica , Gammaretrovirus | MEWSWVFLFFLSVTTGVHSRFPNITNLCPFDEVFNATTFASVYAWNRKRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIRGNEVSQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSTVGGNYNYRYRLFRKSKLKPFERDISTEIYQAGNKPCNGVAGVNCYFPLQSYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTGSLVPRGSSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKHHHHHHHH |
| S2H97 Fab heavy chain | I | 223 | Salmonella Enterica , Gammaretrovirus | QVRLVQSGAEVKKSGESLKISCKGSGYSFTSYWIGWVRQMPGKGLEWMGIIYPGDSDTRYSPSFQGQVTISADKSISTVYLQWSSLKASDTAMYYCARQWSHYTYDYYYWGQGTLVTISSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC |
| S2V29 Fab light chain | L | 216 | Salmonella Enterica , Gammaretrovirus | QSVLTQPRSVSGSPGQSVTISCTGTSSDVGAYNYVSWYQQHPGKAPKFMIYDVDQRPSGVPDRFSGSKSGNTASLIISGLQAEDEADYYCSSYAGSYIWVFGGGTQLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS |
| S2H97 Fab light chain | M | 218 | Salmonella Enterica , Gammaretrovirus | QSVLTQPASVSGSPGQSITISCTGISSDVGGYNSVSWYQQHPGKAPKLMIYDVTNRPSGVSNRFSGSKSGNTASLTISGLQAEDEADYYCSSYTSSSTPPYVFGTGTKVSVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2024-02-28 Deposition Author(s): Cameroni, E. , Corti, D. , Czudnochowski, N. , Errico, J.M. , Marco, A.D. , Nix, J.C. , Park, Y.J. , Pinto, D. , Rietz, T. , Seattle Structural Genomics Center For Infectious Disease (Ssgcid) , Snell, G. , Veesler, D.